These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAAATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTATGAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAACGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGAATATGACG] [+] EMBL CD151664 [AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAAATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTATGAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAACGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGAATATGACG] consensusID : consensus_5098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [GCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCACTTAATAGGCATTTTTCTACCTTGTTCAGCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATCTAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGATCCT] [-] EMBL CD115977 [GCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCACTTAATAGGCATTTTTCTACCTTGTTCAGCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCAT ] [+] EMBL CD135860 [ AACTGTGTTATGGTTAGCGCAGTGTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAATTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATCTAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5098#0 AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAA 60 consensus_5098#1 ------------------------------------------------------------ consensus_5098#0 ATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTAT 120 consensus_5098#1 ------------------------------------------------------------ consensus_5098#0 GAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTG 180 consensus_5098#1 -------------------------GCGAACACCACGAGCAATTTGTTCTACAGCTTCTG 35 *********************************** consensus_5098#0 CATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACAC 240 consensus_5098#1 CATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACAC 95 ********************************* ************************** consensus_5098#0 CAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCA 300 consensus_5098#1 CAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCA 155 ************************ *********************************** consensus_5098#0 TCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAA 360 consensus_5098#1 TCCACTTAATAGGCATTTTTCTACCTTGTTCAGCT------------------------- 190 **** ****************************** consensus_5098#0 CGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTC 420 consensus_5098#1 ------------------------------------------------------------ consensus_5098#0 TTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACA 480 consensus_5098#1 -TGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACA 249 *********************************************************** consensus_5098#0 ATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGA 540 consensus_5098#1 ATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGA 309 ************************** ****************************** ** consensus_5098#0 TTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGT 600 consensus_5098#1 TTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGT 369 ************************************************************ consensus_5098#0 TAGTTCATTTTGTTTAGCTATGAGAATATGACG--------------------------- 633 consensus_5098#1 TAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCAT 429 ************************* ****** consensus_5098#0 ------------------------------------------------------------ consensus_5098#1 AACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATC 489 consensus_5098#0 ------------------------------------------------------------ consensus_5098#1 AAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATC 549 consensus_5098#0 ------------------------------------------------------------ consensus_5098#1 TAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGA 609 consensus_5098#0 ---- consensus_5098#1 TCCT 613 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||