cluster # 5101

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Schistosoma mansoni
cluster # 5101 cluster # 5101 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5101#0 length = 335 sequences # 1

consensus_5101#1 length = 236 sequences # 2

consensusID : consensus_5101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGAAAATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAGGAAGGACCAAATACCTGACAACACTACGTCGAATTTAGCGATTCGCAAACGTATATCAATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATTGTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCACTTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC]

[+] EMBL CD194075             [AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGAAAATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAGGAAGGACCAAATACCTGACAACACTACGTCGAATTTAGCGATTCGCAAACGTATATCAATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATTGTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCACTTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC]




>consensus_5101#0
AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGA
AAATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAGG
AAGGACCAAATACCTGACAACACTACGTCGAATTTAGCGATTCGCAAACGTATATCAATG
CTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATTGTT
GATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCACTTC
CCATAAATATAGCAGCCGATATACGTATTCGAGAC

consensusID : consensus_5101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 236
fasta sequence

                              [CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGAGTAGTCATGTTTCCCATTGATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGATATTAGCAGTTGTCAATATTGCAATTGTACATAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAATGACGATCAGGCATCTTGGTGGATAT]

[+] EMBL CD077944             [CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGAGTAGTCATGTTTCCCATTGATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGATATTAGCAGTTGTCAATATTGCAATTGTACATAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAATGACGATCAGGCATCTTGGTGGATAT]
[+] EMBL CD122561             [                        GGACTGGTTGACCCTGAGAGT GTCATGTTTCCCATTGATTGGGTGTGCNCTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCGGGTTATTCTACGTTGAGGGGTTG                                                                                                ]




>consensus_5101#1
CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGAGTAGTCATGTTTCCCAT
TGATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCAGGT
TATTCTACGTTTAGTTGTTGTGATATTAGCAGTTGTCAATATTGCAATTGTACATAACGG
CTGCTATATGTATGGGAAGTGCTTGTTTAATGACGATCAGGCATCTTGGTGGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5101#0      AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGA 60
consensus_5101#1      -----------------CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGA 43
                                        **** *     * *     * *     *  **  *  *****

consensus_5101#0      A-AATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAG 119
consensus_5101#1      GTAGTCATGTTTCCCATT--GATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAA-AT 100
                        * ** *** *   ***  *   * *  ****            ** ** * *  * * 

consensus_5101#0      GAAGGACCAAATAC-CTGACAACACTACGTCGAATT-TAGCGATTCGCAAACGTATATCA 177
consensus_5101#1      TATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGAT--ATTAGCAGTTGTCA 158
                       * *  * ***  * * *   *  ******  * ** * * ***     * *   * ***

consensus_5101#0      ATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATT 237
consensus_5101#1      ATA-TTGCAAT--TGTACA----TAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAAT 211
                      **  *** ***  *** **    ***   *  * * *  ** * ** *     * *** *

consensus_5101#0      GTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCAC 297
consensus_5101#1      GACGATCAGGCATCTTGGTGGATAT----------------------------------- 236
                      *  *** * * *          ***                                   

consensus_5101#0      TTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC 335
consensus_5101#1      --------------------------------------