These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 375 fasta sequence [AGACAGCCATTGATCTGTGTGTTTGATGTCCTACTGTGCCTGCTCCAGTGTAGGTTATAAGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAACTGCACTAAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAAACGAAGTGTTTTATGCTGAG] [+] EMBL CD186705 [AGACAGCCATTGATCTGTGTGTTTGATGTCCTACTGTGCCTGCTCCAGTGTAGGTTATAAGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAACTGCACTAAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAAACGAAGTGTTTTATGCTGAG] [-] EMBL CD192576 [ TAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGg ] consensusID : consensus_5115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TATAAAATAGATTGGATTATTGGTTCGCATCAATGGAATCTATTTGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGATGATATTATTCACTACAATCTGTTAATGCTTATGCACAAGATATTTCTGCGAAATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCATATTCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTTGAAGCTGCCA] [+] EMBL CD187333 [TATAAAATAGATTGGATTATTGGTTCGCATCAATGGAATCTATTTGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGATGATATTATTCACTACAATCTGTTAATGCTTATGCACAAGATATTTCTGCGAAATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCATATTCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTTGAAGCTGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5115#0 AGACAGCCATTGATCTGTGTGTTTGAT-GTCCTACTGTGCCTGCTCCAGTGTAGGTTATA 59 consensus_5115#1 ---------------TATAAAATAGATTGGATTATTG-GTTCGCATCAATGGAATCTATT 44 * * * *** * ** ** * ** ** ** * *** consensus_5115#0 AGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGG 119 consensus_5115#1 TGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGA 104 **** ** * ** ** * * *** * * * * *** * consensus_5115#0 ATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCAT-CGTGTGCAGC 178 consensus_5115#1 TGATATTATTCACTAC------AATCTGTT-AATGCTTATGCACAAGATATTTCTGCGAA 157 *** * * ** *** ** ** ** * * * ** ** * *** consensus_5115#0 TTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCAT 238 consensus_5115#1 ATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCAT--AT 215 * ** ** ** * * * **** * ** * * ** * * * *** ** consensus_5115#0 CCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAAC---TGCACT 295 consensus_5115#1 TCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACC 275 * * * * * * * ******* **** * ** * ** ***** consensus_5115#0 AAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAA 355 consensus_5115#1 ATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGA---AACTCCATCCCAAATCT 332 * *** **** * * * * **** * ** * * ** ** consensus_5115#0 ACGAAGTGTTTTATGCTGAG 375 consensus_5115#1 TTGAAGC-TGCCA------- 344 **** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||