These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 249 fasta sequence [ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGG] [+] EMBL CD192248 [ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGG] [-] EMBL CD192505 [ GGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATATACCTGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTA ] consensusID : consensus_5120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [TCCGTCGTGGGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGGTCAGTCAGTCAGTCAG] [+] EMBL CD090228 [TCCGTCGTGGGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGGTCAGTCAGTCAGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5120#0 ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAA 60 consensus_5120#1 ------------------------------------------------------------ consensus_5120#0 TACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTAT 120 consensus_5120#1 ------------------------------------------------------------ consensus_5120#0 TAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTA 180 consensus_5120#1 --------------------------TCCGTCGTGGGGATAATTCACCGAGCAATATTTA 34 * * ************************ consensus_5120#0 AGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTA 240 consensus_5120#1 AGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTA 94 ************************************************************ consensus_5120#0 CATCGTCGG---------------- 249 consensus_5120#1 CATCGTCGGTCAGTCAGTCAGTCAG 119 ********* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||