These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence [ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAATGATATTACTGAATACAGTATTATATAATATTGTTTATTGTAATATCCGTTTATATCGAAAATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCATAACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCC-ACTATGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTAATCATTACATTCTTTTTCATCTAAAATATCATTCAATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACTAAACTGTTACCAATGTAAATTATGCTGAAAC] [+] EMBL CD072988 [ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAATGATATTACTGAATACAGTATTATATAATATTGTTTATTGTAATATCCGTTTATATCGAAAATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCATAACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCC ACTATGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTAATCATTACATTCTTTTTCATCTAAAATATCATTCAATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACTAAACTGTTACCAATGTAAATTATGCTGAAAC] [-] EMBL AA883030 [ atgcttgTTG TCAG CCT ACCTCCTGCTATGTACAGAATAGATTCTACAATTAGCAATGCTTCATCTTCCAAAAGATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTTATCATTACATTCTTTTTCATCTAGAATATCATTCGATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAGATAACA ] consensusID : consensus_5179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CGCAAAATGTTCTGGGAATTAGAAAATCAAAAAGACTGCCCATTACATATATCCGCTCCATTTTTGGATCCATCAACAACAAATGATGATATCAGTTTACCTGACGAAAAAAATGATCCCACAGTAGAGAATGACTCAGACGATAGTAAACAGAATATAGATGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAAGTTGAAACAAGAAGAGAAAACATCAGCTCTATATAAATCACATGAAGAATCAAAAGATTCAAATGAAGATTCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTCAAAGTTAACTTTCTTCCATGTAACAGTTTTTTAGACTTACCTATAAGATACCGATCTTTATTTCTCAAAAGTACC] [+] EMBL CD078519 [CGCAAAATGTTCTGGGAATTAGAAAATCAAAAAGACTGCCCATTACATATATCCGCTCCATTTTTGGATCCATCAACAACAAATGATGATATCAGTTTACCTGACGAAAAAAATGATCCCACAGTAGAGAATGACTCAGACGATAGTAAACAGAATATAGATGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAAGTTGAAACAAGAAGAGAAAACATCAGCTCTATATAAATCACATGAAGAATCAAAAGATTCAAATGAAGATTCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTCAAAGTTAACTTTCTTCCATGTAACAGTTTTTTAGACTTACCTATAAGATACCGATCTTTATTTCTCAAAAGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5179#0 ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAAT 60 consensus_5179#1 -----------------------------------------------------CGCAAAA 7 ** consensus_5179#0 GATATTACTGAATACAGTATTATATAATATTGTTTATTGTA-ATATCCGTTTATATCGAA 119 consensus_5179#1 TGTTCTGGGAATTAGAAAATCA-AAAAGACTGCCCATTACATATATCCGCTCCATTTTTG 66 * * * ** * ** * * ** * ** *** * ******* * * consensus_5179#0 AATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCAT 179 consensus_5179#1 GATCCA-----TCAACAACAAATGATGATATCAGTTTACCTGA--CGAAA--AAAATGAT 117 ** * * * * * * ** * *** **** * ** ***** ***** ** consensus_5179#0 AACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCCACTA 239 consensus_5179#1 CCCACAGTAGAGAATGACTCAGACGATAG--------TAAACAGAATATAG--------A 161 * ** * ** * * * ** **** * * * ** * consensus_5179#0 TGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAA 299 consensus_5179#1 TGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAA-GTTGAAACAAG 220 *** ****** * * ** * * ***** * *** **** ** consensus_5179#0 CACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTT 359 consensus_5179#1 AAGAGAAAACATCAGCTCTATATAAATCACATGA-AGAATCAAAAGATTCAAATGAAGAT 279 * * * * ***** ** ****** * * * * * *** * * * * consensus_5179#0 TCATGTCTTC--TAATTAATCATTACAT--TCTTTTTCATCTAAAATATCATTCAATTTC 415 consensus_5179#1 TCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTC 339 **** * **** ** **** * * ** *** * ** ** * *** consensus_5179#0 AAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACT 475 consensus_5179#1 AAA-GTTAACTTTCTTCCATGTAACAGTT--TTTTAGACTTACCTATAAGATACCGATCT 396 *** ** * * * ** * * *** * ***** * * * * * * ** ** consensus_5179#0 AAACTGTTACCAATGTAAATTATGCTGAAAC 506 consensus_5179#1 TTATT-TCTCAAAAGTACC------------ 414 * * * * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||