These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGTATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCATAGTGAATCCACAAGATTTGTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTGTCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTCTAAACTGTTGATATAACTAGATAAACCGATGAAATGATGTACTTGGACTCATTGTCGTATAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTCAGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTGAACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT] [+] EMBL CD062148 [ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGTATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCATAGTGAATCCACAAGATTTGTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTGTCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTCTAAACTGTTGATATAACTAGATAAACCGATGAAATGATGTACTTGGACTCATTGTCGTATAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTCAGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTGAACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT] consensusID : consensus_518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [TATTTATTCGGAAATTAACACAAACATGTAAGGATGATTGTCACCCTCATTATTATCATCATCATCGTCATCAGAATCATCGTAAATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTGCCGAATTC] [+] EMBL AI764881 [TATTTATTCGGAAATTAACACAAACATGTAAGGATGATTGTCACCCTCATTATTATCATCATCATCGTCATCAGAATCATCGTAAATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTGCCGAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_518#0 ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGT 60 consensus_518#1 -------------------------TATTT-ATTCGGA-AATTAACACAAACATGTAAGG 33 **** **** * ** * * * ** consensus_518#0 ATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCA 120 consensus_518#1 ATGATTGTCACCCTCATTATTA------TCATCATC-ATCGTCATCAG--AATCATCGTA 84 ** * *** * **** * * ** ** * **** ** ** * consensus_518#0 TAGTGAATCCACAAGATTT-GTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTG 179 consensus_518#1 AATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGC-TTCTCCAATGGCG 143 * * *** * **** * * * * * * ** ** ** * consensus_518#0 TCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTC 239 consensus_518#1 CCTCCAATACCAATGTA--TTGCCAACT-----ACCTGAGCAGA-AACAGATAACGGATC 195 * * * ****** ** * * * *** ** * *** ** consensus_518#0 TAAACTGTTGATATAACTAGATA-AACCGATGAAATGATGTACTTGGACTCATTGTCGTA 298 consensus_518#1 --AACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTG 253 ****** * ** *** ** ** ** ** ** *** **** consensus_518#0 TAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTC 358 consensus_518#1 CCGAATTC---------------------------------------------------- 261 * ** consensus_518#0 AGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTA 418 consensus_518#1 ------------------------------------------------------------ consensus_518#0 GGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTG 478 consensus_518#1 ------------------------------------------------------------ consensus_518#0 AACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT 530 consensus_518#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||