cluster # 518

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 518 cluster # 518 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_518#0 length = 530 sequences # 1

consensus_518#1 length = 261 sequences # 1

consensusID : consensus_518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGTATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCATAGTGAATCCACAAGATTTGTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTGTCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTCTAAACTGTTGATATAACTAGATAAACCGATGAAATGATGTACTTGGACTCATTGTCGTATAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTCAGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTGAACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT]

[+] EMBL CD062148             [ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGTATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCATAGTGAATCCACAAGATTTGTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTGTCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTCTAAACTGTTGATATAACTAGATAAACCGATGAAATGATGTACTTGGACTCATTGTCGTATAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTCAGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTGAACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT]




>consensus_518#0
ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGT
ATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCA
TAGTGAATCCACAAGATTTGTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTGT
CATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTCT
AAACTGTTGATATAACTAGATAAACCGATGAAATGATGTACTTGGACTCATTGTCGTATA
GTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTCAG
GATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTAGG
ACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTGAA
CACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT

consensusID : consensus_518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TATTTATTCGGAAATTAACACAAACATGTAAGGATGATTGTCACCCTCATTATTATCATCATCATCGTCATCAGAATCATCGTAAATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTGCCGAATTC]

[+] EMBL AI764881             [TATTTATTCGGAAATTAACACAAACATGTAAGGATGATTGTCACCCTCATTATTATCATCATCATCGTCATCAGAATCATCGTAAATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTGCCGAATTC]




>consensus_518#1
TATTTATTCGGAAATTAACACAAACATGTAAGGATGATTGTCACCCTCATTATTATCATC
ATCATCGTCATCAGAATCATCGTAAATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAAT
CGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGA
AACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGA
GCTCGACCTCGTGCCGAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_518#0      ATTATGTTTCCTGGAATACTTTACTCATTTCATTCAACTGGTCCACGTATTCGCATCAGT 60
consensus_518#1      -------------------------TATTT-ATTCGGA-AATTAACACAAACATGTAAGG 33
                                               **** ****      *  **  *  *   * ** 

consensus_518#0      ATCACAGTCTATTCTGTGATTAGTTGGATATTTGTCGATAATTATCAACCAACTTTCCCA 120
consensus_518#1      ATGATTGTCACCCTCATTATTA------TCATCATC-ATCGTCATCAG--AATCATCGTA 84
                     ** *  ***       * ****      *  *  ** **  * ****   **   **  *

consensus_518#0      TAGTGAATCCACAAGATTT-GTAATCACTAAACGGTACTCTTCAGCATTGCATAAATCTG 179
consensus_518#1      AATCCAGTCCGTATTATTTTGCTTCTAGTGAGTAATCGCATGTTGC-TTCTCCAATGGCG 143
                      *   * ***  *  **** *     * * *    *    *   ** **    **    *

consensus_518#0      TCATAATTGTTAATGTAGTCTGTCGGTCTTGTAGCTTCTGCAATCGACTGTTAATAACTC 239
consensus_518#1      CCTCCAATACCAATGTA--TTGCCAACT-----ACCTGAGCAGA-AACAGATAACGGATC 195
                      *   * *   ******   ** *          * *  ***    ** * ***    **

consensus_518#0      TAAACTGTTGATATAACTAGATA-AACCGATGAAATGATGTACTTGGACTCATTGTCGTA 298
consensus_518#1      --AACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTCGTG 253
                       ******   *  **    ***  ** **   **   **    **  ***    **** 

consensus_518#0      TAGTCTTTCAGTACCTAACATGAATAAAAACAGCTCATGCAAGGTAGCGACATTCGCTTC 358
consensus_518#1      CCGAATTC---------------------------------------------------- 261
                       *  **                                                     

consensus_518#0      AGGATGGTTTCCTAATCCGTTTACTTAAAGTAATTCAGTCAGTCACTCAGCTACAACGTA 418
consensus_518#1      ------------------------------------------------------------
                                                                                 

consensus_518#0      GGACCAGGCACACATATGCATCGGTCTAAGTTGCCACACATCACTCATTAACACAAGGTG 478
consensus_518#1      ------------------------------------------------------------
                                                                                 

consensus_518#0      AACACCAAAGTCATAGAAGTAGTTAATTTAGTGGTGGTAGTATATAAGAGAT 530
consensus_518#1      ----------------------------------------------------