These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TCATCATGNAACAACANCAGTGTGTCGGATCTATTTCTAACCTGTATTAAGCTTAATGTTCTGTTANGTTTAAGTGAATGTTTAGATAAAGATAAATCAATTCAGCTTGATTTAATACCAGAACATATTCTACTCATCTTAACACCATCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGATAAATNGCCTAATACTGATAGTAATCATAATGAAGTCATCTTGAAAGAGACTAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATAACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAATCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTTTTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT] [+] EMBL SM7761 [TCATCATGNAACAACANCAGTGTGTCGGATCTATTTCTAACCTGTATTAAGCTTAATGTTCTGTTANGTTTAAGTGAATGTTTAGATAAAGATAAATCAATTCAGCTTGATTTAATACCAGAACATATTCTACTCATCTTAACACCATCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGATAAATNGCCTAATACTGATAGTAATCATAATGAAGTCATCTTGAAAGAGACTAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATAACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAATCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTTTTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT] consensusID : consensus_5226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence [TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCAACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGATCACACAAGATGTTTAATACCTTCAAAATATTATCATCGTAATTTAAGTCAAACAGTACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAATAGATTACCAGGGAAGTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATGTAAAGAAATGATTATTTCTTTATT] [-] EMBL CD190125 [TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCAACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGATCACACAAGATGTTTAATACCTTCAAAATATTATCATCGTAATTTAAGTCAAACAGTACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACAT ] [-] EMBL CD061214 [ AGTCAAACAGTACCAGCCAATGCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAATAGATTACCAGGGAAGTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATGTAAAGAAATGATTATTTCTTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5226#0 -----------------------------------------TCATCATGNAACAACANCA 19 consensus_5226#1 TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCA 60 * ** *** ** consensus_5226#0 GTGTGTCG--GATCTATT-TCTAACCTGT--------ATTAAGCTTAATGTTCTGTTANG 68 consensus_5226#1 ACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGA 120 ** * **** * ***** * * * * ** * * * * consensus_5226#0 TTTAAGTGAATGTTTAGATAAAGATAAATCAAT-TCAGCTTGATTTAATACCAGAACATA 127 consensus_5226#1 TCACACAAGATGTTTA-ATACCTTCAAAATATTATCATCGTAATTTAAGTC--AAACAGT 177 * * ******* *** *** * * *** * * ****** * **** consensus_5226#0 TTCTACTCATCTTAACACCA--TCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGA 185 consensus_5226#1 ACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAG 237 * * *** * * * ** * *** ** * ** ** * * * * consensus_5226#0 TAAATNGCCTAATACTGATAGT------AAT--------CATAATGAAGTCATCT----- 226 consensus_5226#1 ACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAAT-AGATTACCAGGGAA 296 * * * *** **** *** ****** * * * * consensus_5226#0 -TGAAAGAGACTA-----ATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATT 280 consensus_5226#1 GTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATT 356 * ***** ** * ****************************************** consensus_5226#0 CAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATT 340 consensus_5226#1 CAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATT 416 ********* ************************************************** consensus_5226#0 ATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATA 400 consensus_5226#1 ATCAATGTAAAGAAATGATTATTTCTTTATT----------------------------- 447 ****** ************************ consensus_5226#0 ACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAA 460 consensus_5226#1 ------------------------------------------------------------ consensus_5226#0 TCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTT 520 consensus_5226#1 ------------------------------------------------------------ consensus_5226#0 TTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT 551 consensus_5226#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||