These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAAATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTCATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAACCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTATATGCTTCTTCACCATC] [+] EMBL CD129356 [GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAAATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTCATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAACCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTATATGCTTCTTCACCATC] [+] EMBL CD089865 [ GATAATGTTATCTAGTTACATTAGAAATCAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGAAAGTTATGTTAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTC ] consensusID : consensus_5248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [GGATACCCCTGGTCAAGGTTGAGAAATCAGGCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGGCAACTCCTAATTC] [+] EMBL CD129364 [GGATACCCCTGGTCAAGGTTGAGAAATCAGGCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTACATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGTATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTATCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACCACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTGTAACTCAGAATCTCACACTGGCAACTCCTAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5248#0 GTGACTTGGTACGTGATATTAGCNGCGTAGGTTCCGAAACATAACAGTTAGGTCTCAAAA 60 consensus_5248#1 ------------------------------------------------------------ consensus_5248#0 ATTTCACAAACGATGTTCAGGAGCATATACATGATAATGTTATCTAGTTACATTAGAAAT 120 consensus_5248#1 ------------------------------------------------------------ consensus_5248#0 CAGTTCTACGACTAAATCATGCAGCATGATCACAACTAAAGGTCTAAGCTGA-AAGTCAT 179 consensus_5248#1 ---------------------------GGATACCCCT---GGTCAAGGTTGAGAAATCAG 30 * ** ** **** * * *** ** *** consensus_5248#0 GT--TAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTA 237 consensus_5248#1 GCAACAGAAATAAACGAATATATGTCGCACTTATGATAGGTTGTTTTTATTGATGAGTTA 90 * ******************************************************* consensus_5248#0 CATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGT 297 consensus_5248#1 CATTATAGTCTTAATAGTTTTAGTCTTTTATTTATTTTGTCTTTTATCATTGAACAAAGT 150 ************************************************************ consensus_5248#0 ATAGGTTACAGCAAATACATACCGTAACTCAGATGTAATGTTGGACGTTAACAGTTGGTA 357 consensus_5248#1 ATAGGTTACAGCAAATACATACCGTAACTCATATGTAATGTTGGACGTTAACAGTTGGTA 210 ******************************* **************************** consensus_5248#0 TCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACC 417 consensus_5248#1 TCGGAGGTAGGATCCGGCTTGCTAAACACTAACCATGTTACCATCTGTGACTCCCAGACC 270 ************************************************************ consensus_5248#0 ACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTG 477 consensus_5248#1 ACATACATATCATCCTTAAACTCAGTGAATTTACGTACTGCAGGGATAAGAAGAGCTGTG 330 ************************************************************ consensus_5248#0 TAACTCAGAATCTCACACTGTCAACTCCTAATTCCGATTGTTAGACTGCTTTAACCTGAA 537 consensus_5248#1 TAACTCAGAATCTCACACTGGCAACTCCTAATTC-------------------------- 364 ******************** ************* consensus_5248#0 CCCAGCATTATTGTTTATTGCTATTGACTACTTTTATTATTAAACATAGGTACCCATTAT 597 consensus_5248#1 ------------------------------------------------------------ consensus_5248#0 ATGCTTCTTCACCATC 613 consensus_5248#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||