These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 380 fasta sequence [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG] [+] EMBL CD139126 [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG] [+] EMBL CD194322 [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCCATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATTATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAA ] consensusID : consensus_5255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT] [-] EMBL CD139204 [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5255#0 ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 60 consensus_5255#1 -TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 59 *********************************************************** consensus_5255#0 AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 120 consensus_5255#1 AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 119 ************************************************************ consensus_5255#0 CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 180 consensus_5255#1 CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 179 ************************************************************ consensus_5255#0 ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGT 240 consensus_5255#1 ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCAT------------TTTTGAGGTTGT 227 ************************************ ************ consensus_5255#0 TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTT 300 consensus_5255#1 TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATT 287 ********************************************************* ** consensus_5255#0 TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 360 consensus_5255#1 TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 347 ************************************************************ consensus_5255#0 GGTAGTTGATGGAATAGATG 380 consensus_5255#1 GGTAGTTGATGGAAT----- 362 *************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||