cluster # 527

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Schistosoma mansoni
cluster # 527 cluster # 527 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_527#0 length = 448 sequences # 1

consensus_527#1 length = 402 sequences # 1

consensusID : consensus_527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AACAACACCCAATGGTACTTCTTCANAATGAGCTAAATAATTTGTCAGTAGATTCTAAACTTAACCTTAGAACTAATTGTACAACAACAACTGTTAATGAAGGTCCTCGATTGAATTCAAGATCTGATTTGTGGTCACATGACAAAGATGTATTCGCAAAACAGCTACGTTTACCGTATATAGCCCAAAGAGAAATTTTGGAAGATATTTCATTATGTTTAGCGATAGCAGTACGTAATACAGCTTACTGGCAAAGATTATGCCTTCGTTCATCAGGTACTTTATTGTTCTTGTTCCATACCAGTTTGGTTCTTGACAGAAAAATTGCACGCAATATGATATATTTAATTCAACTAGCTGTCTGTCCAAACTCGTTGGAATCACGTAGACATAGTACCGGAAAACACTTACATGATGAACTCAAACGTTCAACCTATTCAGTTCAATC]

[+] EMBL CD186405             [AACAACACCCAATGGTACTTCTTCANAATGAGCTAAATAATTTGTCAGTAGATTCTAAACTTAACCTTAGAACTAATTGTACAACAACAACTGTTAATGAAGGTCCTCGATTGAATTCAAGATCTGATTTGTGGTCACATGACAAAGATGTATTCGCAAAACAGCTACGTTTACCGTATATAGCCCAAAGAGAAATTTTGGAAGATATTTCATTATGTTTAGCGATAGCAGTACGTAATACAGCTTACTGGCAAAGATTATGCCTTCGTTCATCAGGTACTTTATTGTTCTTGTTCCATACCAGTTTGGTTCTTGACAGAAAAATTGCACGCAATATGATATATTTAATTCAACTAGCTGTCTGTCCAAACTCGTTGGAATCACGTAGACATAGTACCGGAAAACACTTACATGATGAACTCAAACGTTCAACCTATTCAGTTCAATC]




>consensus_527#0
AACAACACCCAATGGTACTTCTTCANAATGAGCTAAATAATTTGTCAGTAGATTCTAAAC
TTAACCTTAGAACTAATTGTACAACAACAACTGTTAATGAAGGTCCTCGATTGAATTCAA
GATCTGATTTGTGGTCACATGACAAAGATGTATTCGCAAAACAGCTACGTTTACCGTATA
TAGCCCAAAGAGAAATTTTGGAAGATATTTCATTATGTTTAGCGATAGCAGTACGTAATA
CAGCTTACTGGCAAAGATTATGCCTTCGTTCATCAGGTACTTTATTGTTCTTGTTCCATA
CCAGTTTGGTTCTTGACAGAAAAATTGCACGCAATATGATATATTTAATTCAACTAGCTG
TCTGTCCAAACTCGTTGGAATCACGTAGACATAGTACCGGAAAACACTTACATGATGAAC
TCAAACGTTCAACCTATTCAGTTCAATC

consensusID : consensus_527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [ACATGATGAACTCAAACGTTCAACCTATTCAGTTCAATCAACTGAAATGAAATTATCACGAGTTATTGCACGTTATTTAATACTACCTAGGAGTTCACAAATATCCACTTGTTCAGAGATAAGCTTAGATGAGAATCTGTCGAATTATAACGATTTAGAGCATACAGATGTACATACTTCACCATTATTTACACAATTCGTTCGTACATTTCTGTGCCGATGTCCTAAAAAAGCTATTCGTGATTCAACAGCGCATATATTATCCACAATATTCAGCTGTGTTTGTCGTGAAGCTCAACATCGTATACTCAGTTTAATAACATTTCTATGGCCTGAATTATCTACATTTGTACCTTATTCCAATCAGTTTGTCCAGTTAAGTATTCATCTATTGAATTCTTA]

[+] EMBL CD183571             [ACATGATGAACTCAAACGTTCAACCTATTCAGTTCAATCAACTGAAATGAAATTATCACGAGTTATTGCACGTTATTTAATACTACCTAGGAGTTCACAAATATCCACTTGTTCAGAGATAAGCTTAGATGAGAATCTGTCGAATTATAACGATTTAGAGCATACAGATGTACATACTTCACCATTATTTACACAATTCGTTCGTACATTTCTGTGCCGATGTCCTAAAAAAGCTATTCGTGATTCAACAGCGCATATATTATCCACAATATTCAGCTGTGTTTGTCGTGAAGCTCAACATCGTATACTCAGTTTAATAACATTTCTATGGCCTGAATTATCTACATTTGTACCTTATTCCAATCAGTTTGTCCAGTTAAGTATTCATCTATTGAATTCTTA]




>consensus_527#1
ACATGATGAACTCAAACGTTCAACCTATTCAGTTCAATCAACTGAAATGAAATTATCACG
AGTTATTGCACGTTATTTAATACTACCTAGGAGTTCACAAATATCCACTTGTTCAGAGAT
AAGCTTAGATGAGAATCTGTCGAATTATAACGATTTAGAGCATACAGATGTACATACTTC
ACCATTATTTACACAATTCGTTCGTACATTTCTGTGCCGATGTCCTAAAAAAGCTATTCG
TGATTCAACAGCGCATATATTATCCACAATATTCAGCTGTGTTTGTCGTGAAGCTCAACA
TCGTATACTCAGTTTAATAACATTTCTATGGCCTGAATTATCTACATTTGTACCTTATTC
CAATCAGTTTGTCCAGTTAAGTATTCATCTATTGAATTCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_527#0      AACAACACCCAATGGTACTTCTTCANAATGAGCTAAATAATTTGTCAGTAGATTCTAAAC 60
consensus_527#1      ----------------------ACATGATGAACTCAAACGT---TCAACCTATTC--AGT 33
                                            **  **** ** **   *   ***    ****  *  

consensus_527#0      TTAACCTTAGAACTAATTGTACAACAACAACTGTTAATGAAGGTC-CTCGATTGAATTCA 119
consensus_527#1      TCAATC----AACTGAAATGAAATTATCACGAGTTATTGCACGTTATTTAATACTACCTA 89
                     * ** *    **** *    * *  * **   **** ** * **   *  **   *   *

consensus_527#0      AGATCTGATTTGTGGTCACATGA-CAAAGATGTATTCGCAAAACAGCTACGTTTACCGTA 178
consensus_527#1      GGAGTTCACAAATATCCACTTGTTCAGAGATAAGCTTAGATGAGAATC-TGTCGAAT-TA 147
                      **  * *    *   *** **  ** ****    *   *  * *     **  *   **

consensus_527#0      TATAGCCCAAAGAGAAATTTTGGAAGATATTTCATTATGTTTAGCGATAGCAGTACGTA- 237
consensus_527#1      TAACGATTTAGAGCATACAGATGTACATACTTCACCATTATTTACACAATTCGTTCGTAC 207
                     **  *    *    * *     * * *** ****  **  **  *   *   ** **** 

consensus_527#0      ------ATACAGCTTACTGGCAAAGATTATGCCTTCGTTCATCAGGTACTTTATTGTTCT 291
consensus_527#1      ATTTCTGTGCCGATGTCCTAAAAAAGCTAT-TCGTGATTCAACAGCGCATATATTATCCA 266
                            * * * *  *    ***   ***  * *  **** ***    * **** * * 

consensus_527#0      TGTTCCATACCAGTTTGGTTCTTGACAGAAAAATTGCACGCAATATGATATATTTAATTC 351
consensus_527#1      CAATAT---TCAGCT--GTGTTTGTCGTGAAG------CTCAACATCGTATACTCAGTTT 315
                        *      *** *  **  *** *   **       * *** **  **** * * ** 

consensus_527#0      AACTAGCTGTCTGTCCAAACTCGTTGGAATCACGTAGACATAGTACCGGAAAACACTTAC 411
consensus_527#1      AATAACATTTCTA-------TGGCCTGAATTATCTACATTT-GTACCTTATTCCAATCAG 367
                     **  *  * ***        * *   **** *  ** *  * *****  *   ** * * 

consensus_527#0      ATGATGAACTCAAACGTTCAACCTATTCAGTTCAATC 448
consensus_527#1      TTTGTCCAGTTAAGTATTCA-TCTATTGAATTCTTA- 402
                      *  *  * * **   ****  ***** * ***