cluster # 5469

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Schistosoma mansoni
cluster # 5469 cluster # 5469 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5469#0 length = 420 sequences # 2

consensus_5469#1 length = 292 sequences # 1

consensusID : consensus_5469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 420
fasta sequence

                              [ATGTAACTTTCCACCCCGACGATATTGTAATTAGCGAAGATGTTATTAAGCGGATCAAAAATGCTGCTACCACTGAGGATAATGCGAAAGATGATCTTCCTGCCCCAGAATCATTCAAACCGCAATACAGCCTAGG-TTTAAAACATGAACTAGAAGAGGCAGAAAGAAGATACGAAAAGCTCCTGCAACTATTAGAAAAACGTAATGAGCAGCTGTTCAACGAGGCTGCAGAAGAATATACGCGGACAGTTGAACGTTTAGAAAACAAGTACATCGTTCGTTCAAATCTACTCTACGTCTGGAAACTGCACTGAAGTGACAGAATGTATATGTTGACTTGCATTCCATAACTCTATGTATAAAGAGTTGTGGAATCATCCACCTACCTAACAATTTCAAACCGAGGAGACCTACTCCTGG]

[+] EMBL CD125547             [ATGTAACTTTCCACCCCGACGATATTGTAATTAGCGAAGATGTTATTAAGCGGATCAAAAATGCTGCTACCACTGAGGATAATGCGAAAGATGATCTTCCTGCCCCAGAATCATTCAAACCGCAATACAGCCTAGG TTTAAAACATGAACTAGAAGAGGCAGAAAGAAGATACGAAAAGCTCCTGCAACTATTAGAAAAACGTAATGAGCAGCTGTTCAACGAGGCTGCAGAAGAATATACGCGGACAGTTGAACGTTTAGAAAACAAGTACATCGTTCGTTCAAATCTACTCTACGTCTGGAAACTGCACTGAAGTGACAGAATGTATATGTTGACTTGCATTCCATAACTCTATGTATAAAGAGTTGTGGAATCATCCACCTACCTAACAATTTCAAACCGAGGAGACCTACTCCTGG]
[-] EMBL CD111675             [                            AATTAGCGAAGATGTTATTAAGCGGATCAAAAATGCTGCTACCACTGAGGATAATGCGAAAGATGATCTTCCTGCCCCAGAATCATTCAAACCGCAATACAGCCTAGGTTTTAAAACATGAACTAGAAGAGCCAGAAAGAAGATACGAAAAGCTTCTGCAACTATTAGAAAAACGTAATGAACAGCTGTTCAACGAGGCTGCAGAAGAATATACGCGGACAGTTGAACGTTTAGAAAACAAGTACATCGTTCGTTCAAATCTACTCTACGTCTGGAAACTGCACTGAAGTGACAGAATGTATATGTTGACTTGCATTCCATAACTCTATGTATAAAGAGTTGTGGAATCATCCACCTACCTAA     T  AACCGAGGAG            ]




>consensus_5469#0
ATGTAACTTTCCACCCCGACGATATTGTAATTAGCGAAGATGTTATTAAGCGGATCAAAA
ATGCTGCTACCACTGAGGATAATGCGAAAGATGATCTTCCTGCCCCAGAATCATTCAAAC
CGCAATACAGCCTAGGTTTAAAACATGAACTAGAAGAGGCAGAAAGAAGATACGAAAAGC
TCCTGCAACTATTAGAAAAACGTAATGAGCAGCTGTTCAACGAGGCTGCAGAAGAATATA
CGCGGACAGTTGAACGTTTAGAAAACAAGTACATCGTTCGTTCAAATCTACTCTACGTCT
GGAAACTGCACTGAAGTGACAGAATGTATATGTTGACTTGCATTCCATAACTCTATGTAT
AAAGAGTTGTGGAATCATCCACCTACCTAACAATTTCAAACCGAGGAGACCTACTCCTGG

consensusID : consensus_5469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TCAACATTCGATTGAAACAAATGTCATATAACATTACAAATAAAGTATGATTTAATTTGTACAAGGATAATCATTACAACTACTAATCATTTAATTGAAAATGGTATGCTACAATGTTTGTAAGACAACTATAGAATATTTTTCAGAATAGAAATCCATAAAATACAAAGTGGTACTGTGTTAATTTCAGGCAGCATTTTTGATCCGCTTAATAACATCTTCGCTAATTACAATACCGTCGGGGTGGAAAGTTACATCTCGAGTTTGGTGAGAGGCGCCAGAACCCATATCA]

[+] EMBL CD140187             [TCAACATTCGATTGAAACAAATGTCATATAACATTACAAATAAAGTATGATTTAATTTGTACAAGGATAATCATTACAACTACTAATCATTTAATTGAAAATGGTATGCTACAATGTTTGTAAGACAACTATAGAATATTTTTCAGAATAGAAATCCATAAAATACAAAGTGGTACTGTGTTAATTTCAGGCAGCATTTTTGATCCGCTTAATAACATCTTCGCTAATTACAATACCGTCGGGGTGGAAAGTTACATCTCGAGTTTGGTGAGAGGCGCCAGAACCCATATCA]




>consensus_5469#1
TCAACATTCGATTGAAACAAATGTCATATAACATTACAAATAAAGTATGATTTAATTTGT
ACAAGGATAATCATTACAACTACTAATCATTTAATTGAAAATGGTATGCTACAATGTTTG
TAAGACAACTATAGAATATTTTTCAGAATAGAAATCCATAAAATACAAAGTGGTACTGTG
TTAATTTCAGGCAGCATTTTTGATCCGCTTAATAACATCTTCGCTAATTACAATACCGTC
GGGGTGGAAAGTTACATCTCGAGTTTGGTGAGAGGCGCCAGAACCCATATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5469#0      ATGTAACTTTCCACCCCGACGATATTGTAATTAGCGAAGATGTTATTAAGCGGATCAAAA 60
consensus_5469#1      ------------------TCAACATT-CGATTGAAACAAATGTCATATAAC--ATTACAA 39
                                         * * ***   ***     * **** **  * *  ** * **

consensus_5469#0      ATGCTGCTACCACTGAGGATAATGCGAAAGATGATCTTCCTGCCCCAGAATCATTCAAAC 120
consensus_5469#1      ATAAAG-TATGATTTAAT-TTGTAC-AAGGATAATCATTACAACTACTAATCATTTAATT 96
                      **   * **  * * *   *  * * ** *** *** *     *    ******* **  

consensus_5469#0      CGCAATACAGCCTAGGTTTAAAACATGAACTAGAAGAGGCAGAAAGAAGATACGAAAAGC 180
consensus_5469#1      GAAAAT--------GGTATGCTACAATGTTTGTAAGACAACTATAGAATATTTTTCAGAA 148
                         ***        *** *   ***     *  ****     * **** **     *   

consensus_5469#0      TCCTGCAACTATTAGAAAAACGTAATGAGCAGCTGTTCAACGAGGCTGCAGAAGAATATA 240
consensus_5469#1      T-----AGAAATCCATAAAATACAAAGTGGTACTGTGTTAATTTCAGGCAGCATTTTTGA 203
                      *     *   **    ****   ** * *   ****   *       **** *   *  *

consensus_5469#0      CGCGGACAGTTGAACGTTTAGAAAACAAGTACATCGTTCGTTCAAATCTACTCTACGTCT 300
consensus_5469#1      TCCGCTTAATAACAT-CTTCGCTAATTACAATACCGTCGGGGTGGA---AAGTTACATCT 259
                        **   * *   *   ** *  **  *  * * ***  *     *   *   *** ***

consensus_5469#0      GGAAACTGCACTGAAGTGACAGAATGTATATGTTGACTTGCATTCCATAACTCTATGTAT 360
consensus_5469#1      CGAGTTTGGTGAGAGGCGCCAGAACCCATATCA--------------------------- 292
                       **   **    ** * * *****   ****                             

consensus_5469#0      AAAGAGTTGTGGAATCATCCACCTACCTAACAATTTCAAACCGAGGAGACCTACTCCTGG 420
consensus_5469#1      ------------------------------------------------------------