cluster # 5474

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Schistosoma mansoni
cluster # 5474 cluster # 5474 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5474#0 length = 451 sequences # 1

consensus_5474#1 length = 176 sequences # 1
consensus_5474#2 length = 90 sequences # 1

consensusID : consensus_5474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG]

[+] EMBL CD189295             [GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAATCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACACAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTCATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATCCGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATTACTTCATATTGGTGGTTTAATTATAGCGGCG]




>consensus_5474#0
GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAA
TCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACA
CAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTC
ATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATC
CGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT
CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG
TTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATT
ACTTCATATTGGTGGTTTAATTATAGCGGCG

consensusID : consensus_5474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC]

[+] EMBL CD062653             [CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC]




>consensus_5474#1
CATTCTATGGGGGTCATATTTATTGGATCCGGAATTGTATTCTTATCATTAGGTATTAAT
GAATTGAATTACATATCTAAGTTTCTTATCATTTTACATAATACTAAACCAATAATCATT
CCAATTATGATAACTACTGGGACTATTGNGTCAATTGCTTCTCTTATAGGATTCCC

consensusID : consensus_5474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 90
fasta sequence

                              [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT]

[+] EMBL CD062724             [TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGGTTCAATTGCT]




>consensus_5474#2
TCACATATCTAAATGGGGGAGGTTTTACATAATACTAAACCAATAATCATTCCAATTATG
ATAACTACTGGGACTATTGGTTCAATTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5474#0      GTAGAACAAACAAGGATCATAAATCCAATAAACAGGGATCATAAATCCAACACACAGGAA 60
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      TCATAAACCCAATAAACAGGGATCATAAATACAACAAACAAGGATCATAAATACAACACA 120
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      CAGGAATCATAAATCCAACACACAAGGATCATTCATTTCATTTACAATGATGATATTGTC 180
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      ATATCTAGAAAAATATTGGAAATCTATAATCATCCTATCAAATCTCATATTTATTGTATC 240
consensus_5474#2      ------------------------------------------------------------
consensus_5474#1      ------------------------------CATTCTAT-GGGGGTCATATTTATTGGATC 29
                                                                                  

consensus_5474#0      CGGTATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 300
consensus_5474#2      ---------------------------------------TCACATATCTAAATGGGGGAG 21
consensus_5474#1      CGGAATTGTATTCTTATCATTAGGTATTAATGAATTGAATTACATATCTAAGTTTCTTAT 89
                                                             * ********** *     * 

consensus_5474#0      CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 360
consensus_5474#2      -GTTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGG 80
consensus_5474#1      CATTTTACATAATACTAAACCAATAATCATTCCAATTATGATAACTACTGGGACTATTGN 149
                        ********************************************************* 

consensus_5474#0      TTCAATTGCTTCTCTTATAGGATTCATTGGATTATTTCAAAAGAAACAATTTATTATATT 420
consensus_5474#2      TTCAATTGCT-------------------------------------------------- 90
consensus_5474#1      GTCAATTGCTTCTCTTATAGGATTCCC--------------------------------- 176
                       *********                                                  

consensus_5474#0      ACTTCATATTGGTGGTTTAATTATAGCGGCG 451
consensus_5474#2      -------------------------------
consensus_5474#1      -------------------------------