These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATGATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGGTTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAGATGTAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTATGTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCGAAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG] [+] EMBL CD076939 [CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATGATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGGTTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAGATGTAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTATGTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCGAAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG] consensusID : consensus_5538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAATTCTCCTCGTGCCAAATTNTGGCC] [+] EMBL CD073747 [ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAATTC ] [-] EMBL CD079477 [ TCGATTTATTATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAAGTCTCCTCGTGCCAAATTNTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5538#0 --CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGAC 58 consensus_5538#1 ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGAC 60 ******** ***** ******************************************* consensus_5538#0 ATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGAT 118 consensus_5538#1 ATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGAT 120 ************************************************************ consensus_5538#0 TTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCT 178 consensus_5538#1 TTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCT 180 ************************************************************ consensus_5538#0 CATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTAC 238 consensus_5538#1 CATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTAC 240 ************************************************************ consensus_5538#0 ACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAAC 298 consensus_5538#1 ACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAAC 300 ************************************************************ consensus_5538#0 ATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTT 358 consensus_5538#1 ATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTT 360 ************************************************************ consensus_5538#0 TGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATG 418 consensus_5538#1 TGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTT------- 413 ********************************************** * ** consensus_5538#0 ATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGG 478 consensus_5538#1 -TTGAAGACTATCAAAAATAGAGACCAGAAAA-------TAAGGATAAAACATGGTAATA 465 **** * * *** * ** * * * ** * *** ** consensus_5538#0 TTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAG--ATG 536 consensus_5538#1 TAAACACTTGATATGGAGTCAAT---------ATCAAATCCCTGTTAGCCATTGATTATG 516 * * * ** * * * ** *** ** * ** * *** *** consensus_5538#0 TAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTAT 596 consensus_5538#1 TAATAAATAAGAAT------TCTCCTCGTGCCAAATTNTGGCC----------------- 553 ** * **** * *** * * *** * consensus_5538#0 GTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCG 656 consensus_5538#1 ------------------------------------------------------------ consensus_5538#0 AAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG 716 consensus_5538#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||