These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence [TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACCTC] [+] EMBL CD180366 [TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACCTC] [+] EMBL CD180437 [TGGACCCGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGCTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACC ] consensusID : consensus_5568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACCATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGGTCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAATCGATCAGTTGTACCGCGTGAGCCCTTTTCACCTTTATCGCCCAATGGTCCAGGTAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTCGCCGGCTATGCCATTTCGACCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG] [+] EMBL CD189108 [TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACCATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGGTCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAATCGATCAGTTGTACCGCGTGAGCCCTTTTCACCTTTATCGCCCAATGGTCCAGGTAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTCGCCGGCTATGCCATTTCGACCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5568#0 TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACC 60 consensus_5568#1 ---------TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACC 51 ** ** * ***** ** ** ** * ** * **** ** *** consensus_5568#0 TATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGC 120 consensus_5568#1 ATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGG 111 * ** ** ** *** * * *** ** ** *** **** ** consensus_5568#0 ACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAG 180 consensus_5568#1 TCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAA 171 ** * *** * *** * ********* ** * * * * * * * consensus_5568#0 ACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTT 240 consensus_5568#1 TCGATCAGTT----GTACCGCGTGAGCCCTT--TTCACCTTTATCGCCCAATGGTCCAGG 225 * * * ** *** * * * * * * ******* ** * ** consensus_5568#0 GAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGG 300 consensus_5568#1 TAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTC---GCCGGCTATGCCATTTCG 282 ** ** **** *** ** ***** * * *** * ** ** * * * consensus_5568#0 AAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACC 360 consensus_5568#1 A---CCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG--- 336 * ** * **** * *** ** * *** * * **** * *** ** consensus_5568#0 TC 362 consensus_5568#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||