cluster # 5589

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Schistosoma mansoni
cluster # 5589 cluster # 5589 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5589#0 length = 445 sequences # 2

consensus_5589#1 length = 202 sequences # 1

consensusID : consensus_5589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGTGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGATTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATTACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAAAAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCAACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT]

[+] EMBL CD168864             [ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGTGATG                                                                                                                                                                                                                                                               ]
[+] EMBL CD063194             [                                                                                                    GTAATTTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAACATTGGCGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGATTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATTACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAAAAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCAACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT]




>consensus_5589#0
ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTTTGTCTTTCTGTCGAT
GATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCG
GATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAAACAAAGACTAGTAAC
ATTGGTGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGATTCAATATTGCAATT
AATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATTACAATTAAAACATCC
ATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAAAAATAGCGACCACCG
AATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCAACTGATAATCCAGGT
ATTATCATAGGTGTAGTAAAATAGT

consensusID : consensus_5589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCACTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTT]

[+] EMBL CD167401             [AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCACTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTTTGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAATTTAGTTAGCGCTTCGGATGTTT]




>consensus_5589#1
AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCA
CTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTT
TGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAAT
TTAGTTAGCGCTTCGGATGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5589#0      ------------------------------------------------------------
consensus_5589#1      AAGATTTTGATGATATCGTTTTGATGAACCAATTCAACTGGGATACGTTTTTCAATTCCA 60
                                                                                  

consensus_5589#0      ---------------ACCCGGTACCCTTTTGTTTGCTGTTGTCAGGTATCTTCTAATTTT 45
consensus_5589#1      CTAGTAAATAAATTTGTCGGTAAATGTTTTGTTTGCTGTTGTAAGGTATCTTCTAATTTT 120
                                       * *  *   **************** *****************

consensus_5589#0      TGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAAT 105
consensus_5589#1      TGTCTTTCTGTCGATGATAGGTCAATAAGAGTAGCTTCTTTAGCATGTAAGGAGAGTAAT 180
                      ************************************************************

consensus_5589#0      TTAGTTAGCGCTTCGGATGTTTTTCCCTTTGCAATATGCTCTAACCAACGACCTAATGAA 165
consensus_5589#1      TTAGTTAGCGCTTCGGATGTTT-------------------------------------- 202
                      **********************                                      

consensus_5589#0      ACAAAGACTAGTAACATTGGTGATGTTTCAAATACAGTACGTGGACTATGTTGCCAACGA 225
consensus_5589#1      ------------------------------------------------------------
                                                                                  

consensus_5589#0      TTCAATATTGCAATTAATAAAATAACGACAGAATATAAATATGCAATCGTTGTAGCTATT 285
consensus_5589#1      ------------------------------------------------------------
                                                                                  

consensus_5589#0      ACAATTAAAACATCCATATTTGCTATACCATGTTATAATGATTTGTATGCATGAATATAA 345
consensus_5589#1      ------------------------------------------------------------
                                                                                  

consensus_5589#0      AAATAGCGACCACCGAATATCTGTATTGGTGTAGCTAATAAAAACATTAACATATTTTCA 405
consensus_5589#1      ------------------------------------------------------------
                                                                                  

consensus_5589#0      ACTGATAATCCAGGTATTATCATAGGTGTAGTAAAATAGT 445
consensus_5589#1      ----------------------------------------