cluster # 5607

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Schistosoma mansoni
cluster # 5607 cluster # 5607 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5607#0 length = 399 sequences # 2

consensus_5607#1 length = 239 sequences # 1

consensusID : consensus_5607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence

                              [TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATGGCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTTTCGCACTTAAATCGACTTATACCTGCAAACNCATACATNA]

[+] EMBL AI111015             [TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATGGCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTTTCGCACTTAAATCGACTT                      ]
[+] EMBL AI110936             [ AATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAAAAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTNTGAAGAAGAAGAGGAAGAATCGGAAAGAAAAGATTT TCCTTTTATTTCTATTGTNATAAAAAATGGCATCCGATTTTTGTTATTAAATTTCTTCNTTTAACTTTACCTTATTATTTCTGTCAATTAGTTTTTTTTATTCTTATTTGTTTCTGTGGGTNTGTGTATGATGATTGTTTGCTGATTAATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTTTTGTTTGTTTTTTTTTCGCACTTAAATCGACATATACCTGCAAACNCATACATNA]




>consensus_5607#0
TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAA
AAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGA
AGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATG
GCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTTCTGTCAATT
AGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTAA
TAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTTT
CGCACTTAAATCGACTTATACCTGCAAACNCATACATNA

consensusID : consensus_5607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [ACAATAATANCAATGGTATTATTAATNAAAAAAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATGGCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATTTAGTTCTTTTATCCCTATTTGTTTCTGT]

[+] EMBL AI110988             [ACAATAATANCAATGGTATTATTAATNAAAAAAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATGGCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATTTAGTTCTTTTATCCCTATTTGTTTCTGT]




>consensus_5607#1
ACAATAATANCAATGGTATTATTAATNAAAAAAATAGAAAATAATTTTAGGCTGAACAAN
TACNTTTGAGTTTAATGTGGAATTATGAAGAAGAAGAGGAAGAATAGGATNGAAAAGATT
TATNCTTTTATTTCTATTGTTATAAAAAATGGCNTCCGATTTTNGTNATTAANTCCCTCC
ATTNANCTTTACCTCATTATTTTCTGTCATTTAGTTCTTTTATCCCTATTTGTTTCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5607#0      TAATGATAGCAATAATGATAATAATGATAACAATAATAACAATGGTATTATTAATAAAAA 60
consensus_5607#1      -----------------------------ACAATAATANCAATGGTATTATTAATNAAAA 31
                                                   ********* **************** ****

consensus_5607#0      AAATAGAAAATAATTTTAGGCTGAACAATTACATTTGAGTTTAATGTGGAATTATGAAGA 120
consensus_5607#1      AAATAGAAAATAATTTTAGGCTGAACAANTACNTTTGAGTTTAATGTGGAATTATGAAGA 91
                      **************************** *** ***************************

consensus_5607#0      AGAAGAGGAAGAATAGGAAAGAAAAGATTTATACTTTTATTTCTATTGTTATAAAAAATG 180
consensus_5607#1      AGAAGAGGAAGAATAGGATNGAAAAGATTTATNCTTTTATTTCTATTGTTATAAAAAATG 151
                      ******************  ************ ***************************

consensus_5607#0      GCATCCGATTTTNGTTATTAAATTTCTNCATTTAACTTTACCTTATTATTT-CTGTCAAT 239
consensus_5607#1      GCNTCCGATTTTNGTNATTAANTCCCTCCATTNANCTTTACCTCATTATTTTCTGTCATT 211
                      ** ************ ***** *  ** **** * ******** ******* ****** *

consensus_5607#0      TAGTTTTTTTTATNCTTATTTGTTNCTGTGGGTATGTGTATGATGATTGTTTGCTGATTA 299
consensus_5607#1      TAGTTCTTTT-ATCCCTATTTGTTTCTGT------------------------------- 239
                      ***** **** ** * ******** ****                               

consensus_5607#0      ATAACGGATTTTTATTGTTTTGCCTTTTTAACNAGAATCGGTCTNTTGTTTGTTTTTTTT 359
consensus_5607#1      ------------------------------------------------------------
                                                                                  

consensus_5607#0      TCGCACTTAAATCGACTTATACCTGCAAACNCATACATNA 399
consensus_5607#1      ----------------------------------------