cluster # 5629

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Schistosoma mansoni
cluster # 5629 cluster # 5629 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5629#0 length = 513 sequences # 2

consensus_5629#1 length = 263 sequences # 1

consensusID : consensus_5629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence

                              [TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCAAAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTTCAATTTATACGACAACCTAAGTTT]

[+] EMBL AI975554             [TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCAAAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTTCAATTTATACGACAACCTAAGTTT]
[+] EMBL AI975733             [TTATGTTCGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTCCAATTGGACCAAAACAGTTTGTTATCGATAAATAAAACAGTTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTT                        ]




>consensus_5629#0
TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGA
AAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAA
AAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTC
CTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAA
AATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCT
ACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGAT
ATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCA
AAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAA
ATACTAGTTCAATTTATACGACAACCTAAGTTT

consensusID : consensus_5629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGTTTTTTTGACAATAATTAGTTTTATAATCGTTTACCGTCAAAATTCACATCATATTCTTA]

[-] EMBL AI067077             [CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGTTTTTTTGACAATAATTAGTTTTATAATCGTTTACCGTCAAAATTCACATCATATTCTTA]




>consensus_5629#1
CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGT
AAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGAT
ATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAG
TATAACAAATGAAAGAGGTATTGTTTTTTTGACAATAATTAGTTTTATAATCGTTTACCG
TCAAAATTCACATCATATTCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5629#0      TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGA 60
consensus_5629#1      --------------------CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGA 40
                                             ***** ******************** **********

consensus_5629#0      AAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAA 120
consensus_5629#1      AAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAA 100
                      ************************************************************

consensus_5629#0      AAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTC 180
consensus_5629#1      AAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTC 160
                      ************************************************************

consensus_5629#0      CTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAA 240
consensus_5629#1      CTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGT--TTTTTTGACAATAA 218
                      *************************** *********   *     *  * *** ** **

consensus_5629#0      AATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCT 300
consensus_5629#1      T-TAGTTTTATAATCGTT-TACCGTCAA--AATTCACATCATATTCTTA----------- 263
                        * ** * * *    ** *  * ***   * * *  **** ***   *           

consensus_5629#0      ACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGAT 360
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      ATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCA 420
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      AAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAA 480
consensus_5629#1      ------------------------------------------------------------
                                                                                  

consensus_5629#0      ATACTAGTTCAATTTATACGACAACCTAAGTTT 513
consensus_5629#1      ---------------------------------