These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCA] [-] EMBL CD126322 [GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACA ] [+] EMBL CD126392 [ GGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACCGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAGGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCA] consensusID : consensus_5642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [GCTCGGTACCCGTTGTGCCATGATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA] [+] EMBL CD063507 [GCTCGGTACCCGTTGTGCCATGATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5642#0 GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTA 60 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 GTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGG 120 consensus_5642#1 ------------------------------------------------------------ consensus_5642#0 TGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCAT 180 consensus_5642#1 ------------------------------------GCTCGGTACCCGTTGTGCCATGAT 24 * * * ** * ** consensus_5642#0 TTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA 240 consensus_5642#1 TTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA 84 ************************************************************ consensus_5642#0 GGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAA 300 consensus_5642#1 GGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAA 144 *********************************************** ************ consensus_5642#0 GACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACA 360 consensus_5642#1 GACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACA 204 ************************************************************ consensus_5642#0 CTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATC 420 consensus_5642#1 CTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATC 264 ******** *************************************************** consensus_5642#0 GGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTC 480 consensus_5642#1 GGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTC 324 ************************************************************ consensus_5642#0 ATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGG 540 consensus_5642#1 ATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGG 384 ************************************************************ consensus_5642#0 GTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTG 600 consensus_5642#1 GTAGTATCCCAACAAATTGATA-------------------------------------- 406 ********************** consensus_5642#0 TGGTGTCCCAATAGTAATACAAGACCACCAAGATCA 636 consensus_5642#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||