These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAAGTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTTGGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATTAAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA] [+] EMBL AI021753 [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAAGTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTTGGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATTAAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA] [+] EMBL AI021752 [TTAATATACCATGTCTATATTAACACGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAATTTCCTCATTAATTGGCAAAt ] consensusID : consensus_5656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTCACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATCAATTCAAATCATATCGG] [+] EMBL AI014235 [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTCACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATCAATTCAAATCATATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5656#0 TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGT-C 59 consensus_5656#1 TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTC 60 ************************************************ * * ** * consensus_5656#0 AAATCTGTGA-AGCACAAA-ATCTTATAAAA-CGTCCTAAATCTGACTTACAATCAATTC 116 consensus_5656#1 ACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATC 120 * *** * * ******** **** * **** ***** ****** ******* *** ** consensus_5656#0 AATTTAAAT-ATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAA 175 consensus_5656#1 AATTCAAATCATATCGG------------------------------------------- 137 **** **** ******* consensus_5656#0 GTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTT 235 consensus_5656#1 ------------------------------------------------------------ consensus_5656#0 GGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATT 295 consensus_5656#1 ------------------------------------------------------------ consensus_5656#0 AAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA 352 consensus_5656#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||