These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT] [+] EMBL CD121362 [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT] [+] EMBL CD121339 [AAATAAACGGATTTCAAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTGTAGCCGGCCCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCTATAAATTTACCTGCTCATGTTACATTGGCCGCACAAAGCGAGCACTTTCTAAAAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTAGTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATAAAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCATTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTG ] consensusID : consensus_5682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAATGGATCCTCAAATAAATACTTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGCCTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCTATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAAACGCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCAGTTCAATACAGGAGTTATTATTATGACCTTTATGTTTTTCATTTTCATATCTGCCAAGCT] [+] EMBL CD117325 [CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAATGGATCCTCAAATAAATACTTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGCCTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCTATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAAACGCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCAGTTCAATACAGGAGTTATTATTATGACCTTTATGTTTTTCATTTTCATATCTGCCAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5682#0 ---------------------------------------------AAATAAACGGATTTC 15 consensus_5682#1 CTGCATTACGTTATGAATATCGAGTTTAAACGAAATACGGCTGCTGAAATCTTGAATAAA 60 ** * ** consensus_5682#0 AAAATTGTTGAAAGAAAACGTTGTACTTAGCTAAGCTCCGAATTGTTTTCTCTAGCCGGC 75 consensus_5682#1 TGGATCCTCAAATAAATAC-TTCTACTCAGCTAAGCTTCGCATTGTCTTCTCAAGCCGGC 119 ** * ** ** ** ** **** ********* ** ***** ***** ******* consensus_5682#0 CCACCATTTACGGATGTGTTAAGGATAAACTTCCGCTTTGGGCCATATCAATGTGCATCT 135 consensus_5682#1 CTACCATTCACGGTTGTGTTAAGGATAAACTTCCGCTTTGGGCCACATCGATGTGCATCT 179 * ****** **** ******************************* *** ********** consensus_5682#0 ATAAATTTACCTGCTCATGT--------TACATTGGCCGCACAAAGCGAGCACTTTCTAA 187 consensus_5682#1 ATAAATTTACTTGCTCCTGTGGGCAGATTACATTGTTCGTACAAAGCCATCACTTTCCAA 239 ********** ***** *** ******* ** ******* * ******* ** consensus_5682#0 AAAGCATCTCAGAACACTATCCGACAACGCTTTTAAAAGGAGAATGTAAAACAATTACTA 247 consensus_5682#1 AC-GCGTCTCAGAACATTACCCGGCGTGACCTGTAAGAAGAGAATGCAAGACAGCCACCA 298 * ** ********** ** *** * * * *** * ******* ** *** ** * consensus_5682#0 GTTCTATACAGGAGCATTTAATTAACTGTGAACACATCGCTCCAAAAGAGTTTTCTCATA 307 consensus_5682#1 GTTCAATACAGGAGTTATT-----ATTATGACCTTTATGTTTTTCA----TTTTCATATC 349 **** ********* ** * * *** * * * * ***** ** consensus_5682#0 AAGTAATTTACACAGTCAAATGAATTGGGTCGAAGGGAAATTGAATCAACATTTTATGCA 367 consensus_5682#1 TGCCAAGCT--------------------------------------------------- 358 ** * consensus_5682#0 TTACCGGAGCATTGGCAATCCACGAACTCAGGCCCGAACTTTGTGTGCAGAAACGAT 424 consensus_5682#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||