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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[CATTGTTTTATGGATTTTGAAAGTTCACCATTTATCGTACAGATTTCATTTACCGATTGCAAATTAATGTAACAAAGGAATATACTTGATTCAGTTATCAGGTTATAAAACAGCTGGTTTATATGCTTACATATTCAATATACTGAATAATTTTTTCATAAGGCATAATAGACGACAAACTAGGTTGCTTACATAGCATGAAATCAAAATATAAAAGTGAAACAAAATCTGTTTGTCAAGTAATTGTTTCACCTTTTAAACCAAATCAATTTAAACTATATAATAAGAGATATAACCTTGGGAAAGCAAGATTGTAACATTTAACGGTCAAATCAAAGTGACTATGCCTCACTAAGTCGAAGTGAAATGGGTTTAGTGTTTACCAGATGAAATTATAATAAATAACCTGCCATAAAT-AAATGATCAATGTTCTTTAACTAATGAAACAATTTCAAGGGAAAAATATTTAAACGTATAGTAGATGTTTCTGTATACGTACGTGCAACAAGGAATTATTAGAAATAAAAAGGAATGAATGCAAACAATTGAATGGAAGGATTTATGTACAAAAATCCCTTTTCATTGTTTAAACTTTCAACTAAAATACGTTGAACAGTTTTAATTATTAATATAAGTCAACCGATCTATTCAAGTAAATGACCTCTGCAGTGATAACCCAGAG]
[+] EMBL AI976943 [CATTGTTTTATGGATTTTGAAAGTTCACCATTTATCGTACAGATTTCATTTACCGATTGCAAATTAATGTAACAAAGGAATATACTTGATTCAGTTATCAGGTTATAAAACAGCTGGTTTATATGCTTACATATTCAATATACTGAATAATTTTTTCATAAGGCATAATAGACGACAAACTAGGTTGCTTACATAGCATGAAATCAAAATATAAAAGTGAAACAAAATCTGTTTGTCAAGTAATTGTTTCACCTTTTAAACCAAATCAATTTAAACTATATAATAAGAGATATAACCTTGGGAAAGCAAGATTGTAACATTTAACGGTCAAATCAAAGTGACTATGCCTCACTAAGTCGAAGTGAAATGGGTTTAGTGTTTACCAGATGAAATTATAATAAATAACCTGCCATAAAT AAATGATC ]
[+] EMBL CD076786 [ CATATTCAATATACTGAATAATTTTTTCATAAGGCATAATAGACGACAAACTAGGTTGCTTACATAGCATGAAATCAAAATATAAAAGTGAAACAAAATCTGTTTGTCAAGTAATTGTTTCACCTCGAAAACCAAATCAATTTAAACTATAGAATAAGAGATATAAGCTTGGGAAAGCAAGATTGTAACATTTAACGGTCAAATCAAAGTGACTATGCCTCAGTAAGTCGAAGTGAAATGGGTATAGTGTTTACCAAATGAAGTTATAATAAATAACCTGCAATAAATAAAATGATCAATGTTCTTTAACTAATGAAACAATTTCAAGGGAAAAATATTTAAACGTATAGTAGATGTTTCTGTATACGTACGTGCAACAAGGAATTATTAGAAATAAAAAGGAATGAATGCAAACAATTGAATGGAAGGATTTATGTACAAAAATCCCTTTTCATTGTTTAAACTTTCAACTAAAATACGTTGAACAGTTTTAATTATTAATATAAGTCAACCGATCTATTCAAGTAAATGACCTCTGCAGTGATAACCCAGAG]
consensusID : consensus_5770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[TTCGGTCCGAGGCACTACATGATATTCGTCGTGAATATGATACGTTAAAGGAAATGCATGTCCAACTTCGAAATGATTGGTTAAAAGGACAGAAGTCTTTAACTGAACGATTTCAAACTCTTATGAATGAACTTGATGAAATTAAAAAACTAAGAGCCAACGATGCTATCGAGTTATCTAGATTTCGTACAATTTTAATGCAGTTAGATGCAAATTCACTCATCGATTCATCGAATCACATTAATTTTGGTACTGCTGATTATGAGGACAAGTCTTTAACTGATACAGACTTTACAGAGTCGAATACAAATACTATAAACCAAAAAAGTGTTAATTTTAGAAAAAATCCTTTGAATGAAACTGAAGAAAATCCTAGAGATCAAAATGAGAACATTGGTTTATTTGATAATAAAAATCAAACAAATAAACTAAAATCAACATCTGTTAAACCTTCACTTCGACCTAGACCTGTTCCAACTTATGGGACTGTCAGTAATATAAGTAATTAAAATTCTTGTTGTTTTTAAACTTTTCTGATAGGTTNTATTCTTCTGGGTTATCACTGCAGAGGTCATTTACTT]
[+] EMBL CD083214 [TTCGGTCCGAGGCACTACATGATATTCGTCGTGAATATGATACGTTAAAGGAAATGCATGTCCAACTTCGAAATGATTGGTTAAAAGGACAGAAGTCTTTAACTGAACGATTTCAAACTCTTATGAATGAACTTGATGAAATTAAAAAACTAAGAGCCAACGATGCTATCGAGTTATCTAGATTTCGTACAATTTTAATGCAGTTAGATGCAAATTCACTCATCGATTCATCGAATCACATTAATTTTGGTACTGCTGATTATGAGGACAAGTCTTTAACTGATACAGACTTTACAGAGTCGAATACAAATACTATAAACCAAAAAAGTGTTAATTTTAGAAAAAATCCTTTGAATGAAACTGAAGAAAATCCTAGAGATCAAAATGAGAACATTGGTTTATTTGATAATAAAAATCAAACAAATAAACTAAAATCAACATCTGTTAAACCTTCACTTCGACCTAGACCTGTTCCAACTTATGGGACTGTCAGTAATATAAGTAATTAAAATTCTTGTTGTTTTTAAACTTTTCTGATAGGTTNTATTCTTCTGGGTTATCACTGCAGAGGTCATTTACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5770#0 CATTGTTTTATGGATTTTGAAAGTTCACCATTTATCGTACAGATTTCATTTACCGATTGC 60
consensus_5770#1 --------TTCGGTCCGAGGCACTACATGATATTCGTCGTGAATATGATACGTTAAA-GG 51
* ** * * * ** ** * ** * ** * *
consensus_5770#0 AAATTAATGTAACAAAGGAATATACTTGATTCAGTTATCAG--GTTATAAAACAGCTGGT 118
consensus_5770#1 AAATGCATGTCCAACTTCGAAATGATTGGTTAAAAGGACAGAAGTCTTTAACTGAACGAT 111
**** **** * * ** *** ** * *** ** * ** * *
consensus_5770#0 TTATATGCTTACATATTCAATATACTGAATAATTTTTTCATAAGGCATAATAGACGACAA 178
consensus_5770#1 TT-CAAACTCTTATG---AATGAACTTGATGAAATTAA-AAAACTAAGAGCCAACGATGC 166
** * ** ** *** *** ** * ** * ** * * ****
consensus_5770#0 -ACTAGGTTGCTTACATAGCATGAAATCAAAATATAAAAGTGAAACAAAATCTGTTTGTC 237
consensus_5770#1 TATCGAGTTATCTAGATTTCGTACAATTTTAATGCAGT--TAGATGCAAATTCACTCATC 224
* *** ** ** * * *** *** * * * **** * **
consensus_5770#0 AAGTAATTGTTTCACCTTTTAAACCAAATCAATTTAAACTATATAATAAGAGATATAACC 297
consensus_5770#1 GATTCATCGAATCACATT--------AATT--TTGGTACTGCTGATTATGAGGACAAGTC 274
* * ** * **** ** *** ** *** * ** *** * *
consensus_5770#0 TTGGGAAAGCAAGATTGTAACATTTAACGGTCAAATCAAAGTGACTATGCCTCACTAAGT 357
consensus_5770#1 TTT---AACTGATACAG--ACTTTACAGAGTCGAATACAAAT-ACTATAA---ACCAAAA 325
** ** * * * ** ** * *** *** ** * ***** ** **
consensus_5770#0 CGAAGTGAAATGGGTTTAGTGTTTACCAGATGAAATTATAATAAATAACCTGCCATAAAT 417
consensus_5770#1 AAGTGTTAATTTTAGAAAAAATCCTTTGAATGAAACTGAAGAAAATC-CTAGAGATCAAA 384
** ** * * * ****** * * **** * * ** **
consensus_5770#0 AAATGATCAATGTTCTTTAACTAATGAAACAATTTCAAGGGAAAAATATTTAAACGTATA 477
consensus_5770#1 ATGAGAACATTGGT--TTATTTGATAATAAAAATC--------AAACAAATAAAC-TAAA 433
* ** ** ** * *** * ** * * ** * *** * ***** ** *
consensus_5770#0 GTAGATGTTTCTGTATACGTACGTGCAACAAGGAATTATTAGAAATAAAAAGGAATGAAT 537
consensus_5770#1 ATCAACATCTGTTAAACCTTCACTTCGACCTAGACCTGTTCCAACTTATG-GGACTGTCA 492
* * * * * * * * * * ** ** * ** ** * * *** **
consensus_5770#0 GCAA-ACAATTGAATGGAAGGATTTATGTACAAAAATCCCTTTTCATTGTTTAAACTTTC 596
consensus_5770#1 GTAATATAAGTAATTAAAATTCTTGTTGTTTTTAAA-CTTTTCTGATAGGTTNTATTCTT 551
* ** * ** * * * ** ** *** *** * ** * ** * ** * * *
consensus_5770#0 AACTAAAATA-CGTTGAACAGTTTTAATTATTAATATAAGTCAACCGATCTATTCAAGTA 655
consensus_5770#1 --CTGGGTTATCACTGCAGAGGTC-ATTTACTT--------------------------- 581
** ** * ** * ** * * *** *
consensus_5770#0 AATGACCTCTGCAGTGATAACCCAGAG 682
consensus_5770#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||