cluster # 5780

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Schistosoma mansoni
cluster # 5780 cluster # 5780 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5780#0 length = 467 sequences # 2

consensus_5780#1 length = 300 sequences # 1

consensusID : consensus_5780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 467
fasta sequence

                              [CTTGATAATTATTTCTAAGTTAGAAATAACTTAATATAATGTTCCCCTCTAAGTCCGACAATTTTTGTTTCATATTTTTGATTATTTATTTTCGGCAATCTTTTAAAGGGTTTACCATTCCCGGAAAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCAACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGCAATGAACTATCCTGATATAGCTGGTTTGGTAAGCTAGTTACATGGTGCATATATATTGTTTCTTCTATAGTACAAAACATTATATTACATTTCTATTTATCAGTCAGAAATTGGTAATTCTATTCCATCTTATTTCAACTCTAACTTTTAATAGTCACTCATGAAGTAGTTACAAGTTGTTCGAATGATTGTTTTTTATAATTCTCTAAATTACCAGTGATT]

[+] EMBL CD178629             [CTTGATAATTATTTCTAAGTTAGAAATAACTTAATATAATGTTCCCCTCTAAGTCCGACAATTTTTGTTTCATATTTTTGATTATTTATTTTCGGCAATCTTTTAAAGGGTTTACCATTCCCGGAAAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCAACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGCAATGAACTATCCTGATATAGCTGGTTTGGTAAGCTAGTTACATGGTGCATATATATTGTTTCTTCTATAGTACAAAACATTATATTACATTTCTATTTATCAGTCAGAAATTGGTAATTCTATTCCATCTTATTTCAACTCTAACTTTTAATAGTCACTCATGAAGTAGTTACAAGTTGTTCGAATGATTGTTTTTTATAATTCTCTAAATTACCAGTGATT]
[-] EMBL CD178940             [                                                                                                                                                                                                                                                                                                                                                                   gTGGTAATTCTATTCCATCTTATTTCAACTCTAACTTTTAATAGTCACTCATGAAGTAGATACAAGTTGTTCGAATGATTGTTTTTTATAATTCTCTAAACTACCAGT    ]




>consensus_5780#0
CTTGATAATTATTTCTAAGTTAGAAATAACTTAATATAATGTTCCCCTCTAAGTCCGACA
ATTTTTGTTTCATATTTTTGATTATTTATTTTCGGCAATCTTTTAAAGGGTTTACCATTC
CCGGAAAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGT
TTTCAACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGG
ATAGCAATGAACTATCCTGATATAGCTGGTTTGGTAAGCTAGTTACATGGTGCATATATA
TTGTTTCTTCTATAGTACAAAACATTATATTACATTTCTATTTATCAGTCAGAAATTGGT
AATTCTATTCCATCTTATTTCAACTCTAACTTTTAATAGTCACTCATGAAGTAGTTACAA
GTTGTTCGAATGATTGTTTTTTATAATTCTCTAAATTACCAGTGATT

consensusID : consensus_5780#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [AAAATCTATTTCTCTGGAACAAGATGATTTGAATGGAGAGATTTTAGTACTCTGTTGTGAAGGTAATGGTGGATATCCTGAGATTGGAACTCCCTGGGTCCCACTTGGACGAGGTTATTCAGTTTTAGGATGGAATCATCCTGGTTTCGGAGAAAGCACGGGTTTACCATTCCCGGAAAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCAACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGCAAT]

[-] EMBL CD196185             [AAAATCTATTTCTCTGGAACAAGATGATTTGAATGGAGAGATTTTAGTACTCTGTTGTGAAGGTAATGGTGGATATCCTGAGATTGGAACTCCCTGGGTCCCACTTGGACGAGGTTATTCAGTTTTAGGATGGAATCATCCTGGTTTCGGAGAAAGCACGGGTTTACCATTCCCGGAAAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCAACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGCAAT]




>consensus_5780#1
AAAATCTATTTCTCTGGAACAAGATGATTTGAATGGAGAGATTTTAGTACTCTGTTGTGA
AGGTAATGGTGGATATCCTGAGATTGGAACTCCCTGGGTCCCACTTGGACGAGGTTATTC
AGTTTTAGGATGGAATCATCCTGGTTTCGGAGAAAGCACGGGTTTACCATTCCCGGAAAA
GGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCAACC
TAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5780#0      ------------------------------------------CTTGATAAT-TATTTCTA 17
consensus_5780#1      AAAATCTATTTCTCTGGAACAAGATGATTTGAATGGAGAGATTTTAGTACTCTGTTGTGA 60
                                                                 **  ** * * **   *

consensus_5780#0      AGTTAG----AAATAACTTAATATAATGTTCCCCT----CTAAGTCCGACAA---TTTTT 66
consensus_5780#1      AGGTAATGGTGGATATCCTGAGATTGGAACTCCCTGGGTCCCACTTGGACGAGGTTATTC 120
                      ** **       *** * * * **       ****    *  * *  *** *   * ** 

consensus_5780#0      GTTTCATATTTTTGATTATT-TATTTTCGGCAATCTTTTAAAGGGTTTACCATTCCCGGA 125
consensus_5780#1      AGTTTTAGGATGGAATCATCCTGGTTTCGGAGAAAGC---ACGGGTTTACCATTCCCGGA 177
                        **      *   ** **  *  ******  *       * ******************

consensus_5780#0      AAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCA 185
consensus_5780#1      AAAGGAACAGAATGCTGTTGAAGCATGCTTTTTATTTGCTGTACACCGATTACGTTTTCA 237
                      ************************************************************

consensus_5780#0      ACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGC 245
consensus_5780#1      ACCTAGTCAAATATTCGTACTTGGTTGGTCGATTGGTGGTTATACAGCATCTTGGATAGC 297
                      ************************************************************

consensus_5780#0      AATGAACTATCCTGATATAGCTGGTTTGGTAAGCTAGTTACATGGTGCATATATATTGTT 305
consensus_5780#1      AAT--------------------------------------------------------- 300
                      ***                                                         

consensus_5780#0      TCTTCTATAGTACAAAACATTATATTACATTTCTATTTATCAGTCAGAAATTGGTAATTC 365
consensus_5780#1      ------------------------------------------------------------
                                                                                  

consensus_5780#0      TATTCCATCTTATTTCAACTCTAACTTTTAATAGTCACTCATGAAGTAGTTACAAGTTGT 425
consensus_5780#1      ------------------------------------------------------------
                                                                                  

consensus_5780#0      TCGAATGATTGTTTTTTATAATTCTCTAAATTACCAGTGATT 467
consensus_5780#1      ------------------------------------------