These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTTATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTTTTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTTTATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATATATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA] [+] EMBL CD079195 [GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTTATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTTTTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTTTATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATATATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA] consensusID : consensus_5802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence [GATGGATCAGCTGTTACATCTGTAACTGGTGGTGGTGATGTGGCAAATTTTCCCTACAGAACAACTTCTGAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT] [-] EMBL CD074508 [GATGGATCAGCTGTTACATCTGTAACTGGTGGTGGTGATGTGGCAAATTTTCCCTACAGAACAACTTCTGAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT] [-] EMBL CD074330 [ GAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5802#0 GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTT 60 consensus_5802#1 ------------------------------------------------------------ consensus_5802#0 ATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTT 120 consensus_5802#1 ------------------------------------------------------------ consensus_5802#0 TTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTT 180 consensus_5802#1 ------------------------------------------------------------ consensus_5802#0 TATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATA 240 consensus_5802#1 -----------------------------GATGGAT-CAGCTGTTACATCTGTAACTGGT 30 *** ** ** * **** * * ** * consensus_5802#0 TATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAG 300 consensus_5802#1 GGTGGTGATGTG-----GCAAATTTTCCCTA---CAGAACAACTTCTGA--AGATGTAAG 80 * ** * * ** * ** * ** **** * ********* consensus_5802#0 CAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTAT 360 consensus_5802#1 CAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTAT 140 ************************************************************ consensus_5802#0 CAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAA 420 consensus_5802#1 CAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAA 200 ************************************************************ consensus_5802#0 TCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA- 455 consensus_5802#1 TCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT 236 *********************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||