These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence [CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGTATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATATGATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCTCGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTAACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAGAAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACNTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTNTTTTTNTACAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTCTTCAATTCTGTTTGATTGACGTCATGCTATTCATGTTGTCTAGTANTTATAACAGTTTTTCTATGAACATGACTGATAAATATGATATCTTATGCTACTAGATCATTGATATTAGCACCGTGACATACTTTGTCAGTTTTAAGCANTGGTCAGAATTGGTACAGGCT] [+] EMBL CD080082 [CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGTATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATATGATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCTCGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTAACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAGAAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACNTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTNTTTTTNTACAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTCTTCAATTCTGTTTGATTGACGTCATGCTATTCATGTTGTCTAGTANTTATAACAGTTTTTCTATGAACATGACTGATAAATATGATATCTTATGCTACTAGATCATTGATATTAGCACCGTGACATACTTTGTCAGTTTTAAGCANTGGTCAGAATTGGTACAGGCT] consensusID : consensus_5821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [ATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTATTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATCCATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATGGGTNTCCCTATTGGTAACTAGATCCATGGATTTTTAGCAACCGATGGCATCACTNGGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGGNANCANGTT] [+] EMBL SM7661 [ATGATAATGATGATGATGACAAGGAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTATTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATCCATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATGGGTNTCCCTATTGGTAACTAGATCCATGGATTTTTAGCAACCGATGGCATCACTNGGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGGNANCANGTT] consensusID : consensus_5821#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTTCTCAATTCTGTTTGATTGACGTCAATGCTATTCATGTTGTCTAAGTAATTATAACAGTTTTTCCTATGAACATGGACTGATAAATAATTGATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAACCGATGGACATCACTTTTGTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA] [-] EMBL CD076770 [GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGACAGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGATTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGAAATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACTTATTCATTACGGGAGTTGAAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTTAAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAGCTGTTGGTTTTTAATTTATTTTTAGTGTAACTGTATTTTCTCAATTCTGTTTGATTGACGTCAATGCTATTCATGTTGTCTAAGTAATTATAACAGTTTTTCCTATGAACATGGACTGATAAATAATTGATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAACCGATGGACATCACTTTTGTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5821#1 ------------------------------------------------------------ consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 CTCGNAGGCCAANAATTCGGCACGAGGATGATTGTCAATGCCTTGTGGTTAAATTGTCGT 60 consensus_5821#1 ------------------------------------------------------------ consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 ATGCTTTATTTATTCTCTGTTCATGAAAATTTATGGCAAGCTCATTATTTAGATGAATAT 120 consensus_5821#1 ------------------------------------------------------------ consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 GATCAAATTCACCCAATGGATTGGTTAACATTATTACAACATTTGTTCATGACATTTCCT 180 consensus_5821#1 ------------------------------------------------------------ consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 CGTGTTATAGGGATGACTGGCATATTAATTGTAGCTGTAATGTTATTAATTAATTATCTA 240 consensus_5821#1 ------------------------------------------------------------ consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 ACATTTCATATCTGGCTTATTCTGATCAATTGTACATCATATGAGTATTTTCAAGGGAAG 300 consensus_5821#1 -------------------------------------ATGATAATGATGATGATGACAAG 23 consensus_5821#2 ------------------------------------------------------------ consensus_5821#0 AAGTTGATCACTAGTGAAAATTGTTCAACTAACTACAATGATAATGATGATGATGACAAG 360 consensus_5821#1 GAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 83 consensus_5821#2 -------GTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 53 consensus_5821#0 GAGAAGAGTGAAAAGACGATAAACAAAAAGCCTCATTTTCCTTCTACTTCATTATTCGAC 420 ***************************************************** consensus_5821#1 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 143 consensus_5821#2 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 113 consensus_5821#0 AGCAAAATGGTGACGATGATGACAGCAAAGACAATGATGCCTTCTACCGTAAGACGACGA 480 ************************************************************ consensus_5821#1 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATANTTATCGA 203 consensus_5821#2 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGA 173 consensus_5821#0 TTAAAGTCTGATCATAGGTTAAGAGGACAAAATCCAACCAGTACCTATCATAATTATCGA 540 **************************************************** ******* consensus_5821#1 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACT 263 consensus_5821#2 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACT 233 consensus_5821#0 AATTTCTACAATAAAGGTATTAGGAATAATTTATTGGAAATGTATACACAAACTACAACN 600 *********************************************************** consensus_5821#1 T-ATTCATTACGGGAGTTGGAAACATCGTTTACCTGTACAGGTGGCATTTAAAACTCGTT 322 consensus_5821#2 T-ATTCATTACGGGAGTTG-AAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTT 291 consensus_5821#0 TTATTCATTACGGGAGTTG-AAACATCGTTTACCTGTACAGCTGGCATTTAAAACTCGTT 659 * ***************** ********************* ****************** consensus_5821#1 AAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAAAGCTGTGGGTNTTTAATTTA 382 consensus_5821#2 AAACATCTTCCTTTCGACTGATAGATTTTTTTTTACAAAA-GCTGTTGGTTTTTAATTTA 350 consensus_5821#0 AAACATCTTCCTTTCGACTGATAGATTNTTTTTN-TACAAAGCTGTTGGTTTTTAATTTA 718 *************************** ***** * ** ***** *** ********* consensus_5821#1 TTTTTAGGTGGTAACTGTATTTTCTTCAAATCTGGTTNGGNTTGACGGTCAAATGCTATC 442 consensus_5821#2 TTTTTAGT--GTAACTGTATTTTCT-CAATTCTGTTTG--ATTGACGTC--AATGCTATT 403 consensus_5821#0 TTTTTAGT--GTAACTGTATTTCTT-CAATTCTGTTTG--ATTGACGTC---ATGCTATT 770 ******* ************ * *** **** ** ****** ******* consensus_5821#1 CATGTGGGCTTAGGTAATTATACAAGGTTTTCCCTATGAACATGGACTTGATAAATAATG 502 consensus_5821#2 CATGTTGTCT-AAGTAATTATA-ACAGTTTTTCCTATGAACATGGACT-GATAAATAATT 460 consensus_5821#0 CATGTTGTCT--AGTANTTATA-ACAGTTTTTC-TATGAACATG-ACT-GATAAATA--T 822 ***** * ** *** ***** * ***** * ********** *** ******** consensus_5821#1 GGTNTCCCTATTGGTAACTAGATCCAT-GGATTTTTAGCAAC-CGATGG-CATCACTN-- 557 consensus_5821#2 GATATCCTTATTGCTAACTAGATTCATTGAATATTTAGCAAC-CGATGGACATCACTTTT 519 consensus_5821#0 GATATCTTA--TGCTA-CTAGATCATT--GATATT-AGCACCGTGACATACTTTGTCAG- 875 * * ** ** ** ****** * ** ** **** * ** * * consensus_5821#1 GGGCNAAGTNTAATGTCAAGNGGGTCANGTAATGGG--NANCANGTT------- 602 consensus_5821#2 GTTCATGTCTTAATGTCAGTTGTTTCATGTAATTTGTTAATCATGTCTTATATA 573 consensus_5821#0 TTTTAAGCANTGGTCAGAATTGGTACAGGCT----------------------- 906 * * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||