These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence [NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACATACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCTTGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCGATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGTATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCCATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATCAAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTTATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGTGAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCGAACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACAATCATTTTGTGCTNTTTTCATATGCTCATGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAACAAATCGGTATATGAATGAGTATTCATCACAATATGGATGGGATATCTAGACTTCTATCATAGATTTCTATCTAATTACGTTTTATTTGGAAGAAAATACTCTAGGGGTTACATTCTTGNATCAAAAACCATGATATTACTTTTTTGAAAAGGGGGATTGGATTA] [+] EMBL CD083164 [NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACATACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCTTGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCGATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGTATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCCATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATCAAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTTATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGTGAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCGAACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACAATCATTTTGTGCTNTTTTCATATGCTCATGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAACAAATCGGTATATGAATGAGTATTCATCACAATATGGATGGGATATCTAGACTTCTATCATAGATTTCTATCTAATTACGTTTTATTTGGAAGAAAATACTCTAGGGGTTACATTCTTGNATCAAAAACCATGATATTACTTTTTTGAAAAGGGGGATTGGATTA] consensusID : consensus_5835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ATTTCACTTTAATTCCCATGTCACCAAATTTTGTGAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCGACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCATGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCGGGTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCTTAGTCCTTTCTATCATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTTCCATTCTTTGTATCCAATAATCTATGTATTATTTACTTTTCCCGCAACCCCCTGGTATTTGAAATAGACGA] [-] EMBL CD076737 [ATTTCACTTTAATTCCCATGTCACCAAATTTTGTGAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCGACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCATGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCGGGTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCTTAGTCCTTTCTATCATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTTCCATTCTTTGTATCCAATAATCTATGTATTATTTACTTTTCCCGCAACCCCCTGGTATTTGAAATAGACGA] consensusID : consensus_5835#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GAAGACATCAAGTGATATCGAAATTTCAATTCCTCTTGCTTCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATGACCAAAATTAAGAAACTGATAAATCAATAGAAATTCCGAGTCATATCCTTATATGGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCGGGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATCATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTTTAACTTCCTTGTATACAATATCCAGGATTATTACCTTTTTTGGAAATATGGGAATTTGAATAAGA] [+] EMBL SMAA17945 [GAAGACATCAAGTGATATCGAAATTTCAATTCCTCTTGCTTCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATGACCAAAATTAAGAAACTGATAAATCAATAGAAATTCCGAGTCATATCCTTATATGGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCGGGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATCATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTTTAACTTCCTTGTATACAATATCCAGGATTATTACCTTTTTTGGAAATATGGGAATTTGAATAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5835#0 NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACA 60 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 TACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCT 120 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 TGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCG 180 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 ATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGT 240 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 ATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCC 300 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 ATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATC 360 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 AAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTT 420 consensus_5835#1 ------------------------------------------------------------ consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 ATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGT 480 consensus_5835#1 --------------------------ATTTCACTTTAATTCCCATGTCACCAAATTTTGT 34 consensus_5835#2 ------------------------------------------------------------ consensus_5835#0 GAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCG 540 consensus_5835#1 GAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCG 94 consensus_5835#2 -----------------------------------GAAGACATCAAGTGATATCGAAAT- 24 ** * **** *** * ** consensus_5835#0 AACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTT 600 consensus_5835#1 ACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTT 154 consensus_5835#2 -TTCAATTCCTCTTGCT-TCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATG 82 * * * * * * ** * ** ** * * * ** * ** ** * consensus_5835#0 TGCTAACTCACTATCTTATTCGCTGTCAC-AATCATTTTGTGCTNTTTTCA-TATGCTCA 658 consensus_5835#1 TGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCA 214 consensus_5835#2 ACCAAAATTAAGAAACTGATAA--ATCAATAGAAATTCCGAG------TCA-TATCCTTA 133 * ** * * * * * *** * *** * * *** *** ** * consensus_5835#0 TGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAAC-AAATCG 717 consensus_5835#1 TGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCG 274 consensus_5835#2 TAT-GGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCG 192 * * ******************** ************** ************ ****** consensus_5835#0 G-TATATGAATGAGTATTCATCAC--AATATGGATGGGAT-ATCT-AGAC---TTCTATC 769 consensus_5835#1 G-GTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCT-TAGTCCTTTCTATC 332 consensus_5835#2 GGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATC 252 * ************ ********* * ** **** ******* consensus_5835#0 ATAGATTTC--TATCTAATTA-CGTTTTA--TTTGGAAGAAAAT--ACTCTAGGGG--TT 820 consensus_5835#1 ATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTT 392 consensus_5835#2 ATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTT 312 **** *** ** * ***** ****** ************ ********* ** consensus_5835#0 ACA-TTCTT-GNATCAAA-AACCATGAT-ATTA----CTTTTTTGAAAAG-----GGGGA 867 consensus_5835#1 CCA-TTCTTTGTATCCAATAATCTATGT-ATTATTTACTTTTCCCGCAACCCCCTGGTAT 450 consensus_5835#2 TAACTTCCTTGTATACAATATCCAGGATTATTAC---CTTTTTTGGAAATAT--GGGAAT 367 * *** * * ** ** * * * **** ***** ** ** consensus_5835#0 TTGGATTA----- 875 consensus_5835#1 TTGAAATAGACGA 463 consensus_5835#2 TTGAATAAGA--- 377 *** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||