These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCATTTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGAAGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGAACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATACATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGACCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCATCAGCAACTACCATCAATTCACCCAATT-CCATGACTACT-C--CACCGCCGTCATTTGTTCCACCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCTACAGACTATGTGAAAAAATCCAATGTATTCC] [+] EMBL CD178383 [ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCATTTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGAAGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGAACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATACATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGACCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCATCAGCAACTACCATCAATTCACCCAATT CCATGACTACT C CACCGCCGTCATT ] [+] EMBL CD191602 [ CCTCTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACTGACACTATGATATCGTCTTTTTCTA CATCTAATCCAATACTGTCTACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCATTTGTTCCACCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCTACAGACTATGTGAAAAAATCCAATGTATTCC] consensusID : consensus_5839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence [AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGATATCGTCTTTTTCAACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA] [-] EMBL CD178180 [AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGATATCGTCTTTTTCAACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5839#0 ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCAT 60 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 TTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGA 120 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 AGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGA 180 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 ACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATA 240 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 CATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCG 300 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 AATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATT 360 consensus_5839#1 -------------------AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATT 41 ***************************************** consensus_5839#0 TAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGA 420 consensus_5839#1 TAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGA 101 **** ** ************* *************************** ********* consensus_5839#0 CCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCAT 480 consensus_5839#1 TATCGTCTTTTTC-AACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACAT 160 ***** ***** * ************ ***** ***** ************** *** consensus_5839#0 CAGCAACTACCATCAATTCACCCAATTCCA-TGACTACTCCACCGCCGTCATTTGTTCCA 539 consensus_5839#1 CAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA------ 214 ******************** ****** ** ******** * * *** * * consensus_5839#0 CCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCT 599 consensus_5839#1 ------------------------------------------------------------ consensus_5839#0 ACAGACTATGTGAAAAAATCCAATGTATTCC 630 consensus_5839#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||