cluster # 5854

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Schistosoma mansoni
cluster # 5854 cluster # 5854 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5854#0 length = 869 sequences # 2

consensus_5854#1 length = 539 sequences # 1

consensusID : consensus_5854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 869
fasta sequence

                              [GCTGATTCTTCGTTTCCTCATAGTTGGTTAAAGTAAGCCTCTTAAAACGCTTCAAATATACAGATTTATTCTGTGTATGCTCAACAAAGACACCGATGAATCCATCAAATCCCGTGCACAACTTTGGATGACTAGTTTAGATAACTTTATCCAACAACGTCATTTGGAACGATGTTATCGTTTGTTTCTTAAATCCTCTGTACAAAGACAAGCACGTGATTGTTTATTAGTTTCACAAATGGCCACATTAACTTTAAATATTTTCCGACCAGTGTCACAAATATTAACTAATTCACCTAGCACTATGACAACGGAAACCACCGTCGACGCCACCTCTACCACCATTGATTCTGTGTCTAGTTGTATATCTAATAAAAATGAAGATGATACAATGATTATCGATGGGGCTTTGAAGAATTATATATGTTTCGTCAAAGATTTACCTGAACTAGCTAAAAGTGTTCACCAATTAGCTGTACAACTCTATGTACATCGGTTTAAATTGTCAACTGATAATATCATCAGTCAATTACAGAAATGTCCAATATGCTCAGAANATGTCATTCCGGACCTAACTTATATGAATTGCTCTCAAAACCATCCATTTGAGCGCTGCATGCAATCTCTGGAACCTTGCACTGATCCTATGTTTCGTCATTGTAGTCAGTGTAATCGTGTAGCCCTTAGCGTGTCTCCTCAAGATCGTTTATCCGCTTGGCGTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAATTCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCTTGTATATACCGACAAGATTCATATGTCTTACTTCATCTACATATAAAT]

[+] EMBL CD083117             [GCTGATTCTTCGTTTCCTCATAGTTGGTTAAAGTAAGCCTCTTAAAACGCTTCAAATATACAGATTTATTCTGTGTATGCTCAACAAAGACACCGATGAATCCATCAAATCCCGTGCACAACTTTGGATGACTAGTTTAGATAACTTTATCCAACAACGTCATTTGGAACGATGTTATCGTTTGTTTCTTAAATCCTCTGTACAAAGACAAGCACGTGATTGTTTATTAGTTTCACAAATGGCCACATTAACTTTAAATATTTTCCGACCAGTGTCACAAATATTAACTAATTCACCTAGCACTATGACAACGGAAACCACCGTCGACGCCACCTCTACCACCATTGATTCTGTGTCTAGTTGTATATCTAATAAAAATGAAGATGATACAATGATTATCGATGGGGCTTTGAAGAATTATATATGTTTCGTCAAAGATTTACCTGAACTAGCTAAAAGTGTTCACCAATTAGCTGTACAACTCTATGTACATCGGTTTAAATTGTCAACTGATAATATCATCAGTCAATTACAGAAATGTCCAATATGCTCAGAANATGTCATT                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD076691             [                                                                                                                                                                                                                                                                                                                                         CCACCTCTACCACCATTGATTCTGTGTCTAGTTGTATATCTAATAAAAATGAAGATGATACAATGATTATCGATGGGGCTTTGAAGAATTATATATGTTTCGTCAAAGATTTACCTGAACTAGCTAAAAGTGTTCACCAATTAGCTGTACAACTCTATGTACATCGGTTTAAATTGTCAACTGATAATATCATCAGTCAATTACAGAAATGTCCAATATGCTCAGAAAATGTCATTCCGGACCTAACTTATATGAATTGCTCTCAAAACCATCCATTTGAGCGCTGCATGCAATCTCTGGAACCTTGCACTGATCCTATGTTTCGTCATTGTAGTCAGTGTAATCGTGTAGCCCTTAGCGTGTCTCCTCAAGATCGTTTATCCGCTTGGCGTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAATTCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCTTGTATATACCGACAAGATTCATATGTCTTACTTCATCTACATATAAAT]




>consensus_5854#0
GCTGATTCTTCGTTTCCTCATAGTTGGTTAAAGTAAGCCTCTTAAAACGCTTCAAATATA
CAGATTTATTCTGTGTATGCTCAACAAAGACACCGATGAATCCATCAAATCCCGTGCACA
ACTTTGGATGACTAGTTTAGATAACTTTATCCAACAACGTCATTTGGAACGATGTTATCG
TTTGTTTCTTAAATCCTCTGTACAAAGACAAGCACGTGATTGTTTATTAGTTTCACAAAT
GGCCACATTAACTTTAAATATTTTCCGACCAGTGTCACAAATATTAACTAATTCACCTAG
CACTATGACAACGGAAACCACCGTCGACGCCACCTCTACCACCATTGATTCTGTGTCTAG
TTGTATATCTAATAAAAATGAAGATGATACAATGATTATCGATGGGGCTTTGAAGAATTA
TATATGTTTCGTCAAAGATTTACCTGAACTAGCTAAAAGTGTTCACCAATTAGCTGTACA
ACTCTATGTACATCGGTTTAAATTGTCAACTGATAATATCATCAGTCAATTACAGAAATG
TCCAATATGCTCAGAANATGTCATTCCGGACCTAACTTATATGAATTGCTCTCAAAACCA
TCCATTTGAGCGCTGCATGCAATCTCTGGAACCTTGCACTGATCCTATGTTTCGTCATTG
TAGTCAGTGTAATCGTGTAGCCCTTAGCGTGTCTCCTCAAGATCGTTTATCCGCTTGGCG
TTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAATT
CTAATGCTTATTTTATCATAATGTATATAATATTCATTCCTTGTATATACCGACAAGATT
CATATGTCTTACTTCATCTACATATAAAT

consensusID : consensus_5854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TTGGTTAGCACTAATACGAGTAAACGCTGTACGTGTTGAGAAAGCAATTAGTTATATGGAATAATTAGCATAATGAATAACACGTTTGCGTTTGTAGTGTTAGATTCTGTTTTTCAGTCATTGTGTGGATATTAATACTGAGATGGTGGTACATCCAGTCGACGATCTTCCAAATGGTCGAAATGCGTGCTACGGATTCCATTGCTGGTCTATAATCCAAATATAACAATCTATAGATCGTATTGTTTCTATTTTACTGTTCAATCATCAATTTGGCTATTACTTGTTATTTTTATTCTCCGAACCATTTATCATTAGATCGTTTATCCGCTTGGCGTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAATTCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCCTGTATATACCGACAAGATTCATATGTCTTACTTCATCTACATATAAATCTTCATTTCAAATTCGTTTTTTAATCTGTATTATCGAATGTAAATTGTCATAA]

[+] EMBL CD117348             [TTGGTTAGCACTAATACGAGTAAACGCTGTACGTGTTGAGAAAGCAATTAGTTATATGGAATAATTAGCATAATGAATAACACGTTTGCGTTTGTAGTGTTAGATTCTGTTTTTCAGTCATTGTGTGGATATTAATACTGAGATGGTGGTACATCCAGTCGACGATCTTCCAAATGGTCGAAATGCGTGCTACGGATTCCATTGCTGGTCTATAATCCAAATATAACAATCTATAGATCGTATTGTTTCTATTTTACTGTTCAATCATCAATTTGGCTATTACTTGTTATTTTTATTCTCCGAACCATTTATCATTAGATCGTTTATCCGCTTGGCGTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAATTCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCCTGTATATACCGACAAGATTCATATGTCTTACTTCATCTACATATAAATCTTCATTTCAAATTCGTTTTTTAATCTGTATTATCGAATGTAAATTGTCATAA]




>consensus_5854#1
TTGGTTAGCACTAATACGAGTAAACGCTGTACGTGTTGAGAAAGCAATTAGTTATATGGA
ATAATTAGCATAATGAATAACACGTTTGCGTTTGTAGTGTTAGATTCTGTTTTTCAGTCA
TTGTGTGGATATTAATACTGAGATGGTGGTACATCCAGTCGACGATCTTCCAAATGGTCG
AAATGCGTGCTACGGATTCCATTGCTGGTCTATAATCCAAATATAACAATCTATAGATCG
TATTGTTTCTATTTTACTGTTCAATCATCAATTTGGCTATTACTTGTTATTTTTATTCTC
CGAACCATTTATCATTAGATCGTTTATCCGCTTGGCGTTCAATGATACTTCATCCAATGT
GTATATATTGTGATTTACCATTGACATGGAAAGAATTCTAATGCTTATTTTATCATAATG
TATATAATATTCATTCCCTGTATATACCGACAAGATTCATATGTCTTACTTCATCTACAT
ATAAATCTTCATTTCAAATTCGTTTTTTAATCTGTATTATCGAATGTAAATTGTCATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5854#0      GCTGATTCTTCGTTTCCTCATAGTTGGTTAAAGTAAGCCTCTTAAAACGCTTCAAATATA 60
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      CAGATTTATTCTGTGTATGCTCAACAAAGACACCGATGAATCCATCAAATCCCGTGCACA 120
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      ACTTTGGATGACTAGTTTAGATAACTTTATCCAACAACGTCATTTGGAACGATGTTATCG 180
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      TTTGTTTCTTAAATCCTCTGTACAAAGACAAGCACGTGATTGTTTATTAGTTTCACAAAT 240
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      GGCCACATTAACTTTAAATATTTTCCGACCAGTGTCACAAATATTAACTAATTCACCTAG 300
consensus_5854#1      ------------------------------------------------------------
                                                                                  

consensus_5854#0      CACTATGACAACGGAAACCACCGTCGACGCCACCTCTACCACCATTGATTCTGTGTCTAG 360
consensus_5854#1      --------------------------------------------------------TTGG 4
                                                                               * *

consensus_5854#0      TTGTATATCTAATAAAAATGAAGATGATACAATGATTATCGATGGGGCTTTGAAGAATTA 420
consensus_5854#1      T--TAGCACTAATACGAGTAAACGCTGTACG-----TGTTGAGAAAGCAATTAGTTATAT 57
                      *  **   ******  * * **     ***      * * **    **  * *   **  

consensus_5854#0      TATATGTTTCGT-CAAAGATTTACCTGAACTAGCTAAAAGTGTTCACCAATTAGCTGTAC 479
consensus_5854#1      GGAATAATTAGCATAATGAATAACACGTTTGCGTTTGTAGTGTTAG--ATTCTGTTTTTC 115
                         **  ** *   ** ** * **  *     * *   ******    * *  * * * *

consensus_5854#0      AACTCTATGTACATCGGTTTAAATTGTCAACTGATAATATCATCAGTCAATTACAGAAAT 539
consensus_5854#1      AGTCAT---TGTGTGGATATTAATACTGAGATGGTGGTACATCCAGTCGAC------GAT 166
                      *    *   *   * * * * ***  * *  ** *  **    ***** *        **

consensus_5854#0      GTCCAATATGCTCAGAANATGTCATTCCGGACCTAACTTATATGAATTGCTCTCAAAACC 599
consensus_5854#1      CTTCCAAATGGTCGAAATGCGT-GCTACGGATTCCATTGCTGGTCTATAATC-CAAATAT 224
                       * * * *** **  **   **   * ****    * *  *      *  ** ****   

consensus_5854#0      ATCCATTTGAGCGCTGCATGCAATCTCTGGAACCTTGCACTGATCCTATGTTTCGTCATT 659
consensus_5854#1      AACAATCTATAGATCGTATTGTTTCTATTTTACTGTTCAATCATC---AATTTGGCTATT 281
                      * * ** *       * **    *** *   **  * ** * ***     *** *  ***

consensus_5854#0      GTAGTCAGTGTAATCGTGTAGCCCTTAGCGTGTCTCCTCAAGATCGTTTATCCGCTTGGC 719
consensus_5854#1      AC---TTGT-TATTTTTATTCTCCGAACCATTTATCATTA-GATCGTTTATCCGCTTGGC 336
                             ** ** *  * *   **  * * * * ** * * *******************

consensus_5854#0      GTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAAT 779
consensus_5854#1      GTTCAATGATACTTCATCCAATGTGTATATATTGTGATTTACCATTGACATGGAAAGAAT 396
                      ************************************************************

consensus_5854#0      TCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCTTGTATATACCGACAAGAT 839
consensus_5854#1      TCTAATGCTTATTTTATCATAATGTATATAATATTCATTCCCTGTATATACCGACAAGAT 456
                      ***************************************** ******************

consensus_5854#0      TCATATGTCTTACTTCATCTACATATAAAT------------------------------ 869
consensus_5854#1      TCATATGTCTTACTTCATCTACATATAAATCTTCATTTCAAATTCGTTTTTTAATCTGTA 516
                      ******************************                              

consensus_5854#0      -----------------------
consensus_5854#1      TTATCGAATGTAAATTGTCATAA 539