cluster # 5866

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Schistosoma mansoni
cluster # 5866 cluster # 5866 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5866#0 length = 422 sequences # 2

consensus_5866#1 length = 419 sequences # 1

consensusID : consensus_5866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence

                              [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAAAAG]

[+] EMBL CD095483             [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAAAA ]
[-] EMBL CD095437             [                                                                                                                                    CGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAGAAG]




>consensus_5866#0
CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT
TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT
GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTG
CTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATG
AGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTT
TGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTC
ACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAAA
AG

consensusID : consensus_5866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTCCATGTACCTAGATAAATTGTTGCTCTGGTGGTTAGAAGGGCCATAACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATGAAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTTAATGGGGTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGGACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAGAACCCCAAGAG]

[+] EMBL CD095455             [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTCCATGTACCTAGATAAATTGTTGCTCTGGTGGTTAGAAGGGCCATAACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATGAAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTTAATGGGGTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGGACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAGAACCCCAAGAG]




>consensus_5866#1
CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT
TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT
GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTCCATGTACCTAGATAAATTGTTGC
TCTGGTGGTTAGAAGGGCCATAACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATGAA
GGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTTAATGGGGTGA
GAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGGACAT
TAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAGAACCCCAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5866#0      CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT 60
consensus_5866#1      CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT 60
                      ************************************************************

consensus_5866#0      TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT 120
consensus_5866#1      TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT 120
                      ************************************************************

consensus_5866#0      GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTG 180
consensus_5866#1      GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGT-CCATGTACCTAGATAAATTGTTG 179
                      ************************************ ***********************

consensus_5866#0      CTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATG 240
consensus_5866#1      CTCTGGTGGTTAGAAGGGCCAT-AACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATG 238
                      ******* ***** **** *** * ***  ****** ********** ************

consensus_5866#0      A-GGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGT 299
consensus_5866#1      AAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTT--AATGGG 296
                      * ****** ** ********* *  * ** ********** ***********  ***** 

consensus_5866#0      TTGAATGATTTTTTCTGGTT-AGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGG 358
consensus_5866#1      GTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGG 356
                       ***  *  *****  ***  *** * ************ ***************** **

consensus_5866#0      TCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCA 418
consensus_5866#1      ACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAG-AACCCCA 415
                       ** ****** **************** ** ********* * **** **** *******

consensus_5866#0      AAAG 422
consensus_5866#1      AGAG 419
                      * **