cluster # 5880

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5880 cluster # 5880 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5880#0 length = 559 sequences # 2

consensus_5880#1 length = 279 sequences # 1

consensusID : consensus_5880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 559
fasta sequence

                              [GTTAATTTAAATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGTCGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGCAAATAAATGCTTTGCTGAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGGCGTTTAGATTCTTCCAGTTTCACTTAATCCTGTTAAATTCAAACCTTTGTCCCGATGTCTGGTCGAAAATGATCACTTAATAAACCAATATTCTATGTTTATGTGCTCAACTAAAATCTACTAGCAAACTTCTTTACTAATACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGCCTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATATAGCATAATTCGTAGTCTTCAAGTAAGTTATACTTTTCTATGTAAGAAGTTTGTTTATTTAGTTTTAATGATTGCATGAAATGTTATTTACTGTATCTGTTCCAGTGCGTTATTAATTTCATTCTTCTCA]

[+] EMBL CD184806             [GTTAATTTAAATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGTCGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGCAAATAAATGCTTTGCTGAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGGCGTTTAGATTCTTCCAGTTTCACTTAATCCTGTTAAATTCAAACCTTTGTCCCGATGTCTGGTCGAAAATGATCACTTAATAAACCAATATTCTATGTTTATGTGCTCAACTAAAATCTACTAGCAAACTTCTTTACTAATACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGCCTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATATAGCATAATTCG                                                                                                                      ]
[-] EMBL BE519408             [                                                                                                                                                                                                                                                                                                                                                                                         ATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATATAGCATAATTCGTAGTCTTCAAGTAAGTTATACTTTTCTATGTAAGAAGTTTGTTTATTTAGTTTTAATGATTGCATGAAATGTTATTTACTGTATCTGTTCCAGTGCGTTATTAATTTCATTCTTCTCA]




>consensus_5880#0
GTTAATTTAAATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGT
CGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGCAAATAAATGCTTTGCT
GAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGGCG
TTTAGATTCTTCCAGTTTCACTTAATCCTGTTAAATTCAAACCTTTGTCCCGATGTCTGG
TCGAAAATGATCACTTAATAAACCAATATTCTATGTTTATGTGCTCAACTAAAATCTACT
AGCAAACTTCTTTACTAATACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGC
CTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTC
AGTTGGATATAGCATAATTCGTAGTCTTCAAGTAAGTTATACTTTTCTATGTAAGAAGTT
TGTTTATTTAGTTTTAATGATTGCATGAAATGTTATTTACTGTATCTGTTCCAGTGCGTT
ATTAATTTCATTCTTCTCA

consensusID : consensus_5880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [AATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGTCGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGGAAATAAATGCTTTGCTGAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGCCTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATAT]

[-] EMBL CD095173             [AATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGTCGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGGAAATAAATGCTTTGCTGAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGCCTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATAT]




>consensus_5880#1
AATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGTCGGTCAGAA
AACTGGGTAACTAAAACTATCCCCAAAGATCAGGGAAATAAATGCTTTGCTGAGTCACCA
GTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGACAATATCCGGT
GGTAAACTAAAGGACGCGGAAGCTATGGCCTCATTAGTTGCTATGGATTCTAGGTCAGAC
AACCCTTCTTGGTGGTCGTACATAACTTCAGTTGGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5880#0      GTTAATTTAAATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGT 60
consensus_5880#1      ---------AATCCAAATCATTCAGATGGTTCAGTCAAAATGTCTTCCATAAACGAAAGT 51
                               ***************************************************

consensus_5880#0      CGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGCAAATAAATGCTTTGCT 120
consensus_5880#1      CGGTCAGAAAACTGGGTAACTAAAACTATCCCCAAAGATCAGGGAAATAAATGCTTTGCT 111
                      ******************************************* ****************

consensus_5880#0      GAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAGGCG 180
consensus_5880#1      GAGTCACCAGTTAATAGAAAATACAGCTTAGATCAAATGGAGAAGAGATGGTATCAG--- 168
                      *********************************************************   

consensus_5880#0      TTTAGATTCTTCCAGTTTCACTTAATCCTGTTAAATTCAAACCTTTGTCCCGATGTCTGG 240
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      TCGAAAATGATCACTTAATAAACCAATATTCTATGTTTATGTGCTCAACTAAAATCTACT 300
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      AGCAAACTTCTTTACTAATACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGC 360
consensus_5880#1      -------------------ACAATATCCGGTGGTAAACTAAAGGACGCGGAAGCTATGGC 209
                                         *****************************************

consensus_5880#0      CTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTC 420
consensus_5880#1      CTCATTAGTTGCTATGGATTCTAGGTCAGACAACCCTTCTTGGTGGTCGTACATAACTTC 269
                      ************************************************************

consensus_5880#0      AGTTGGATATAGCATAATTCGTAGTCTTCAAGTAAGTTATACTTTTCTATGTAAGAAGTT 480
consensus_5880#1      AGTTGGATAT-------------------------------------------------- 279
                      **********                                                  

consensus_5880#0      TGTTTATTTAGTTTTAATGATTGCATGAAATGTTATTTACTGTATCTGTTCCAGTGCGTT 540
consensus_5880#1      ------------------------------------------------------------
                                                                                  

consensus_5880#0      ATTAATTTCATTCTTCTCA 559
consensus_5880#1      -------------------