These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTTACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTCCTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAGAGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGTTTAGTCATTCACAGTTCGCAGTTGACGAGGACT] [+] EMBL CD195258 [ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTTACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGC ] [+] EMBL CD095087 [ TAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACAACACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTCCTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAGAGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGTTTAGTCATTCACAGTTCGCAGTTGACGAGGACT] consensusID : consensus_5891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAAACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTTACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTACATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCCCCGGGCGAGCCAGATGTTCTAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC] [-] EMBL BG931524 [GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAAACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTTACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTACATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCCCCGGGCGAGCCAGATGTTCTAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5891#0 ------------------------------------------------------------ consensus_5891#1 GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAA 60 consensus_5891#0 ------ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAG 54 consensus_5891#1 ACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAG 120 ****************************************************** consensus_5891#0 AACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTT 114 consensus_5891#1 AACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTT 180 *********************** *************** ******* ***** ****** consensus_5891#0 ACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTA 174 consensus_5891#1 ACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTA 240 ******* ************************************************* ** consensus_5891#0 CATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACA-GTAATAC--ACCAG 231 consensus_5891#1 CATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCC 300 ************** * ** * * * * * * *** * *** * ** consensus_5891#0 AACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTT 291 consensus_5891#1 CCGGGCGAGCCAGATGTTC--TAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC------ 352 * * ** **** * ** ** *** * * * *** * consensus_5891#0 TACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATA 351 consensus_5891#1 ------------------------------------------------------------ consensus_5891#0 ATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGA 411 consensus_5891#1 ------------------------------------------------------------ consensus_5891#0 GACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTC 471 consensus_5891#1 ------------------------------------------------------------ consensus_5891#0 CTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAG 531 consensus_5891#1 ------------------------------------------------------------ consensus_5891#0 AGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGT 591 consensus_5891#1 ------------------------------------------------------------ consensus_5891#0 TTAGTCATTCACAGTTCGCAGTTGACGAGGACT 624 consensus_5891#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||