cluster # 5930

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Schistosoma mansoni
cluster # 5930 cluster # 5930 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5930#0 length = 684 sequences # 1

consensus_5930#1 length = 256 sequences # 2

consensusID : consensus_5930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CATTCCATCAATGATTGGATTTCGTACAAGTATTGGGAAGATCTCGACTGGAATACGAACATTTACAAAGGCAAGTTCTCTTTGTGCTCCCATCCGTGACAAAAGTATGCATCTTGAACTCTAAGCAAACCCATTCGTTTCAGTCTATATTGAAGTTTATGGGTGTCAAATGAACCGCAGTGATGCCAATATTGCTCATAGTTTATTAACAAAAGCTGGGTATACTATTGTCCCGTCTGATGAACAGTGTGACACTGTTTTGCTCATGACATGTGCCATTCGAGATAGTGCTGAAGTAAAGATTTGGCGACGTATTCAACACCTGCGATCTCTTCATCGTAAATATGTAAAAATAGGTGTTCTAGGATGTATGGCCAAAAGGTTAAAGGATAAACTCCTTATGGATAACAGCTGTAAAACCTCAAAAGCGGGTGATCTTCAGTCATCTAGTTTTGGTCACAATAGTTTCAATGTTGCCGCAGATTTTGTTTGCGGCCCTGATTCTTATCGTGATTTGCCGAAACTTATTGAAGATGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGNTCTTTCTCTACTGGCTTCTATCAGTTATGCGTGGGTGTGA]

[+] EMBL CD065210             [CATTCCATCAATGATTGGATTTCGTACAAGTATTGGGAAGATCTCGACTGGAATACGAACATTTACAAAGGCAAGTTCTCTTTGTGCTCCCATCCGTGACAAAAGTATGCATCTTGAACTCTAAGCAAACCCATTCGTTTCAGTCTATATTGAAGTTTATGGGTGTCAAATGAACCGCAGTGATGCCAATATTGCTCATAGTTTATTAACAAAAGCTGGGTATACTATTGTCCCGTCTGATGAACAGTGTGACACTGTTTTGCTCATGACATGTGCCATTCGAGATAGTGCTGAAGTAAAGATTTGGCGACGTATTCAACACCTGCGATCTCTTCATCGTAAATATGTAAAAATAGGTGTTCTAGGATGTATGGCCAAAAGGTTAAAGGATAAACTCCTTATGGATAACAGCTGTAAAACCTCAAAAGCGGGTGATCTTCAGTCATCTAGTTTTGGTCACAATAGTTTCAATGTTGCCGCAGATTTTGTTTGCGGCCCTGATTCTTATCGTGATTTGCCGAAACTTATTGAAGATGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGNTCTTTCTCTACTGGCTTCTATCAGTTATGCGTGGGTGTGA]




>consensus_5930#0
CATTCCATCAATGATTGGATTTCGTACAAGTATTGGGAAGATCTCGACTGGAATACGAAC
ATTTACAAAGGCAAGTTCTCTTTGTGCTCCCATCCGTGACAAAAGTATGCATCTTGAACT
CTAAGCAAACCCATTCGTTTCAGTCTATATTGAAGTTTATGGGTGTCAAATGAACCGCAG
TGATGCCAATATTGCTCATAGTTTATTAACAAAAGCTGGGTATACTATTGTCCCGTCTGA
TGAACAGTGTGACACTGTTTTGCTCATGACATGTGCCATTCGAGATAGTGCTGAAGTAAA
GATTTGGCGACGTATTCAACACCTGCGATCTCTTCATCGTAAATATGTAAAAATAGGTGT
TCTAGGATGTATGGCCAAAAGGTTAAAGGATAAACTCCTTATGGATAACAGCTGTAAAAC
CTCAAAAGCGGGTGATCTTCAGTCATCTAGTTTTGGTCACAATAGTTTCAATGTTGCCGC
AGATTTTGTTTGCGGCCCTGATTCTTATCGTGATTTGCCGAAACTTATTGAAGATGCTCA
TTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAACATATGCAGATGTAACT
CCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGNTCTTTCTCTACTGGCT
TCTATCAGTTATGCGTGGGTGTGA

consensusID : consensus_5930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 256
fasta sequence

                              [AGGCCAGAATTCGGCACGAGGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAGACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGTTCTTTCTCCTACTGCTTTCTTATCAGTTATGCGTGGGTGTGATAATATGTGCACCTATTGTATTGTACCTTTTTGTCAGAGGACGTGAACGCAGTAGACCATTGGATTCAATCCTTCACGAAGCAC]

[+] EMBL CD077429             [AGGCCAGAATTCGGCACGAGGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAGACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGTTCTTTCTCCTACTGCTTTCTTATCAGTTATGCGTGGGTGTGATAATATGTGCACCTATTGTATTGTACCTTTTTGTCAGA                                              ]
[+] EMBL CD077461             [      GAATTCGGCACGAGGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAGACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGTTCTTTCTCCTACTGCTTTCTTATCAGTTATGCGTGGGTGTGATAATATGTGCACCTATTGTATTGTACC TTTTGTCAGAGGACGTGAACGCAGTAGACCATTGGATTCAATCCTTCACGAAGCAC]




>consensus_5930#1
AGGCCAGAATTCGGCACGAGGCTCATTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTC
TGGAAGAGACATATGCAGATGTAACTCCTGTACGACGTCATTTTACAACTGACGAGTCTT
CAGACCCGGTTCTTTCTCCTACTGCTTTCTTATCAGTTATGCGTGGGTGTGATAATATGT
GCACCTATTGTATTGTACCTTTTTGTCAGAGGACGTGAACGCAGTAGACCATTGGATTCA
ATCCTTCACGAAGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5930#0      CATTCCATCAATGATTGGATTTCGTACAAGTATTGGGAAGATCTCGACTGGAATACGAAC 60
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      ATTTACAAAGGCAAGTTCTCTTTGTGCTCCCATCCGTGACAAAAGTATGCATCTTGAACT 120
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      CTAAGCAAACCCATTCGTTTCAGTCTATATTGAAGTTTATGGGTGTCAAATGAACCGCAG 180
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      TGATGCCAATATTGCTCATAGTTTATTAACAAAAGCTGGGTATACTATTGTCCCGTCTGA 240
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      TGAACAGTGTGACACTGTTTTGCTCATGACATGTGCCATTCGAGATAGTGCTGAAGTAAA 300
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      GATTTGGCGACGTATTCAACACCTGCGATCTCTTCATCGTAAATATGTAAAAATAGGTGT 360
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      TCTAGGATGTATGGCCAAAAGGTTAAAGGATAAACTCCTTATGGATAACAGCTGTAAAAC 420
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      CTCAAAAGCGGGTGATCTTCAGTCATCTAGTTTTGGTCACAATAGTTTCAATGTTGCCGC 480
consensus_5930#1      ------------------------------------------------------------
                                                                                  

consensus_5930#0      AGATTTTGTTTGCGGCCCTGATTCTTATCGTGATTTGCCGAAACTTATTGAAGATGCTCA 540
consensus_5930#1      ----------------------------------AGGCCAGAATTCGGC-ACGAGGCTCA 25
                                                          ***  ** *     * ** *****

consensus_5930#0      TTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGA-ACATATGCAGATGTAAC 599
consensus_5930#1      TTCTGGACTAAAAGGTGCTAGCGTCGCGTTGTCTCTGGAAGAGACATATGCAGATGTAAC 85
                      ****************************************** *****************

consensus_5930#0      TCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGNTCTTTCTC-TACTGG 658
consensus_5930#1      TCCTGTACGACGTCATTTTACAACTGACGAGTCTTCAGACCCGGTTCTTTCTCCTACTGC 145
                      ******************************************** ******** ***** 

consensus_5930#0      CTTCT-ATCAGTTATGCGTGGGTGTGA--------------------------------- 684
consensus_5930#1      TTTCTTATCAGTTATGCGTGGGTGTGATAATATGTGCACCTATTGTATTGTACCTTTTTG 205
                       **** *********************                                 

consensus_5930#0      ---------------------------------------------------
consensus_5930#1      TCAGAGGACGTGAACGCAGTAGACCATTGGATTCAATCCTTCACGAAGCAC 256