cluster # 5968

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Schistosoma mansoni
cluster # 5968 cluster # 5968 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5968#0 length = 653 sequences # 2

consensus_5968#1 length = 584 sequences # 1

consensusID : consensus_5968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 653
fasta sequence

                              [ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACATGATTAGAGCATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACAGATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAATAGTTATTTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACTAATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATTTGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAAAAGTGCAGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCC]

[+] EMBL CD135417             [ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACATGATTAGAGCATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACAGATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTT                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD083741             [                                                                                                                                            TCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAATAGTTATTTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACTAATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATTTGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAAAAGTGCAGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCC]




>consensus_5968#0
ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACATGATTA
GAGCATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACAGATTATCTG
CAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCA
TAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTT
TCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCT
TTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAATAGTTATTTG
ACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACTAATATGGGGTG
GTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATTTGAAAATACGT
ACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAAAAGTGCAGGCC
CAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAAT
ATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCC

consensusID : consensus_5968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCCACACNCATTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCATAGGGTTAGCCTTATTGTATGATACTTCTCCATAAGATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATCGATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATACTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATACTGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTGACAGTCGCGGGAACAATAACGCATTAACTTGCAAGAAGAGCACAACCGAAGATTAGGGATGCTTTTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAAGTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCAGAAGCATCCTGTTGTTGACCTTGTTGA]

[-] EMBL CD161360             [GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCCACACNCATTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCATAGGGTTAGCCTTATTGTATGATACTTCTCCATAAGATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATCGATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATACTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATACTGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTGACAGTCGCGGGAACAATAACGCATTAACTTGCAAGAAGAGCACAACCGAAGATTAGGGATGCTTTTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAAGTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCAGAAGCATCCTGTTGTTGACCTTGTTGA]




>consensus_5968#1
GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCCACACNCATTTGGATCAGTG
ATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCA
AACACTTCCCCACCCAAAAAATCCCATAGGGTTAGCCTTATTGTATGATACTTCTCCATA
AGATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATCGATATGGCATTTC
TGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATACTGATAATCCTTA
AAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATACTGTTTACATTCTC
GTTTGTGCACGCGCCACATAAGAAGCTGACAGTCGCGGGAACAATAACGCATTAACTTGC
AAGAAGAGCACAACCGAAGATTAGGGATGCTTTTCAAACACCCATCACAGTACTTCGAGA
GTTTGTTGTTCAAAATGGAGTGTACGTAAGAAGTCTCCTCTGAGCAGACAACCCCCGTCA
AACTCATTTCTAAATCAGAAGCATCCTGTTGTTGACCTTGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5968#0      ------ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACA 54
consensus_5968#1      GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCC--ACACNCATTTGGATCAG 58
                            *    **    * *    **  ***  ** **  *  ***   *  *  **   

consensus_5968#0      TGATTAGAG---CATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACA 111
consensus_5968#1      TGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCAT--- 115
                      **** *      *** **    * * * *  *  *   ** *    *****   ***   

consensus_5968#0      GATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGT 171
consensus_5968#1      --TTGCAAACACTTC--CCCACCCAAAAAATCCCATAGGGTT--AGCCTTATTGTATGAT 169
                        **     ** ***     *       *    * ***  **  ** * **    *   *

consensus_5968#0      AACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACG 231
consensus_5968#1      ACTTCTCCATAA--GATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATC 227
                      *     ******  *       *  ***  ****      *    * *    ** * *  

consensus_5968#0      AAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTG 291
consensus_5968#1      GATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATA 287
                       *  * *  * **   *  *   *      *** *    *     *   * *  **  * 

consensus_5968#0      ATG-TAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAA 350
consensus_5968#1      CTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATAC 347
                       ** ***** **     * *   ** *    *   *     ** ** ****** *  ** 

consensus_5968#0      TAGTTAT-TTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACT 409
consensus_5968#1      TGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTG----ACAGTCGCGGGAACA 403
                      *  ***  **  *   *  *   *     * * **  * **    *** ** * * *** 

consensus_5968#0      AATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATT 469
consensus_5968#1      ATAACGCATT-------AACTTGCAAGAAGAGCACAAC--CGAAGATTAGG--GATGCTT 452
                      *  * *   *       * * * **     **** * *  *  *** ** *  ** * **

consensus_5968#0      TGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAA 529
consensus_5968#1      TTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAA 512
                      *  *** **  *   **   *   ** *      ** ** * * *    *  * **  **

consensus_5968#0      AAGTGC---AGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATT- 585
consensus_5968#1      GTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCA-GAAGCATCCTGTTG 571
                         * *     **  *  * ** *  **   *   *     **** *****    * ** 

consensus_5968#0      TGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAA 645
consensus_5968#1      TTGACCTTGTTGA----------------------------------------------- 584
                      *  *  **    *                                               

consensus_5968#0      AAATCCCC 653
consensus_5968#1      --------