cluster # 600

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Schistosoma mansoni
cluster # 600 cluster # 600 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_600#0 length = 796 sequences # 1

consensus_600#1 length = 668 sequences # 1

consensusID : consensus_600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence

                              [TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAACAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATTATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTATCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCANAGTACTGATTGCTTTT]

[+] EMBL CD074978             [TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAACAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATTATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTATCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCANAGTACTGATTGCTTTT]




>consensus_600#0
TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTT
GGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTC
ACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCA
AATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTA
TAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTT
TTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAAT
AAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTT
ATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAA
TATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGA
AGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAAC
AGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATT
ATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTA
TCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCAN
AGTACTGATTGCTTTT

consensusID : consensus_600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACCAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCCTCGTGCCGAATTATTGGCCCGGA]

[-] EMBL CD082734             [TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACCAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCCTCGTGCCGAATTATTGGCCCGGA]




>consensus_600#1
TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTTGGATATATTAG
ACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGT
AACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAA
ACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACA
ATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAG
TTTACCTCTTTTTTTAAAGAATAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAA
TTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAAT
ATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTAC
AATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGA
TGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACCAGGTTAAAATAA
TGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCCTCGTGCCGAATTATT
GGCCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_600#0      TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTT 60
consensus_600#1      -----------TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTT 49
                                 *********************************** *******  ***

consensus_600#0      GGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTC 120
consensus_600#1      GGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTC 109
                     ************************************************************

consensus_600#0      ACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCA 180
consensus_600#1      ACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCA 169
                     ************************************************************

consensus_600#0      AATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTA 240
consensus_600#1      AATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTA 229
                     ************************************************************

consensus_600#0      TAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTT 300
consensus_600#1      TAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTT 289
                     ************************************************************

consensus_600#0      TTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAAT 360
consensus_600#1      TTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAA-TTTAATACATAAGAAGTACAAT 348
                     ************************************* **********************

consensus_600#0      AAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTT 420
consensus_600#1      AAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTT 408
                     ************************************************************

consensus_600#0      ATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAA 480
consensus_600#1      ATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAA 468
                     ************************************************************

consensus_600#0      TATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGA 540
consensus_600#1      TATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGA 528
                     ************************************************************

consensus_600#0      AGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAAC 600
consensus_600#1      AGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACC 588
                     ********************************************************** *

consensus_600#0      AGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATT 660
consensus_600#1      AGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCC-TC 647
                     *******************************************************   * 

consensus_600#0      ATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTA 720
consensus_600#1      GTGCCGAATTA--TTGGCCCGGA------------------------------------- 668
                      * * ** *    **       *                                     

consensus_600#0      TCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCAN 780
consensus_600#1      ------------------------------------------------------------
                                                                                 

consensus_600#0      AGTACTGATTGCTTTT 796
consensus_600#1      ----------------