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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 651 fasta sequence
[CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT]
[+] EMBL CD082617 [CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAAAGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACCCAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTTTATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT]
[-] EMBL CD155675 [ AGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGCTGCATCATTAAAGCTAATTAGTTCAGAAA ]
consensusID : consensus_6001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT]
[+] EMBL CD186020 [AAATTTACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGGACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGATTCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACACAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTAAATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCATGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAACGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCATTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAAACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCANAGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6001#0 CTCGAGGCCANAATTCGGCACGAGGCGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 60
consensus_6001#1 ----------AAATTT---ACGTAACGTAACCTTGAGTCACGCTGCAATTTACGTTCTGG 47
**** *** ***********************************
consensus_6001#0 ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 120
consensus_6001#1 ACCGTCGTTATTTGAAGTTTAAACTAAGTGCTATTGTGTTCATCACAGATGAAAGAGGAT 107
************************************************************
consensus_6001#0 TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 180
consensus_6001#1 TCTAATTGTCTTCGAGAAAGGGTTCTCAATTTGTTCAAGTCATCACGAGGAGCTCTTACA 167
************************************************************
consensus_6001#0 CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 240
consensus_6001#1 CAAAAGCATTTTGAAAAGGAATTTTCTGACGTATCACTCACTACCATTCTACCCATCTTA 227
************************************************************
consensus_6001#0 AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 300
consensus_6001#1 AATGCATTACAAAAGGAGGGGATGTTGGATGTTTTGGTTAATACAGATAGGACTTTATCA 287
************************************************************
consensus_6001#0 TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 360
consensus_6001#1 TGGCAACTTAGAGATCAAGATTCGACTGAAAAGTTAAAAAGCTTATCGGATTTGGAAGAA 347
************************************************************
consensus_6001#0 CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACG-------------------- 400
consensus_6001#1 CGTTTGGTTTACAATGCTATACGTAACGCCGGCGAAGACGGTATATTGCTTCTAATCTCA 407
****************************************
consensus_6001#0 --------------------------CTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 434
consensus_6001#1 TTTCCATACCTTAATCTCTAATTCAGCTGCATCATTAAAGCTAATTAGTTCAGAAACTAA 467
**********************************
consensus_6001#0 ACTGCCTCAAAATCGCATACCTAGGATACTAAAATCACTAATTTCTAAGAAGATGATCAA 494
consensus_6001#1 ACTGCCTCANAATCGCATACCTAGGATACTAAAATCACTAACTTCTAAGAAGATGATCAN 527
********* ******************************* *****************
consensus_6001#0 AGAAGTGCCGATGGCTGTTGGTCACAAACAGAAAGTTTACTTGCTAATGGAATTAGAACC 554
consensus_6001#1 AGAAGTGCCGATGGCTGTTGGTCACAAACAGAANAGTTACTTGCTAAT------------ 575
********************************* ************
consensus_6001#0 CAGTGAAAAGTTGGCTGCAAATACATTATTTGCCGGTGATTCTGGTGTGGATGCAGAGTT 614
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TATTTCTATTTTAAGAACAGCCTGCCTAAAGTATCTT 651
consensus_6001#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||