These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATGGATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAACATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAGTTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCCTTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACATCGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCTGCACCATTTCAGTTGGATATTCTTCGTTTGAA] [+] EMBL CD090249 [GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATGGATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAACATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAGTTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCCTTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACATCGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTC ] [-] EMBL BG931718 [ CTGGCGACTATAGGAGTTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCTGCACCATTTCAGTTGGATATTCTTCGTTTGAA] consensusID : consensus_6005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [AATATCTCAGTCTAATGTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGAATTAGTTGATTCTGCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCTGGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAACAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAATATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGCAAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTGTC] [+] EMBL CD082427 [AATATCTCAGTCTAATGTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGAATTAGTTGATTCTGCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCTGGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAACAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAATATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGCAAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6005#0 GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATG 60 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 GATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAAC 120 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 ATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAG 180 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 TTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCC 240 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 TTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACAT 300 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 CGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGT 360 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 TCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAA 420 consensus_6005#1 ------------------------------------------------------------ consensus_6005#0 GTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATT 480 consensus_6005#1 -------------------------------------------AATATCTCAGTCTAATG 17 **************** consensus_6005#0 TGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTAC 540 consensus_6005#1 TGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTAC 77 ************************************************************ consensus_6005#0 TGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATA 600 consensus_6005#1 TGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATA 137 ***************************** ****************************** consensus_6005#0 GTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATA 660 consensus_6005#1 GTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATA 197 ************************ ***************** ***************** consensus_6005#0 TTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATC 720 consensus_6005#1 TTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATC 257 *********************************** ************************ consensus_6005#0 AGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCT 780 consensus_6005#1 AGAGTTTGTCGATGCGAGAGATAGAAG-------------------AATTAGTTGATTCT 298 *************************** ************** consensus_6005#0 GCACCATTTCAGTTGGATATTCTTCGTTTGAA---------------------------- 812 consensus_6005#1 GCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCT 358 ******** ********************* * consensus_6005#0 ------------------------------------------------------------ consensus_6005#1 GGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAA 418 consensus_6005#0 ------------------------------------------------------------ consensus_6005#1 CAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAA 478 consensus_6005#0 ------------------------------------------------------------ consensus_6005#1 TATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGC 538 consensus_6005#0 ------------------------------------------------------------ consensus_6005#1 AAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTG 598 consensus_6005#0 -- consensus_6005#1 TC 600 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||