These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence [TTCAAAAGAGCACANATTTTACCCCAAGTTTTTATTTCCCACTTGGAAAGACCTTAAATGTCATTGGTTCGTTTCCTCTTTTAGTACACTATTTTGTGACATTTCCTAAGAACATTTTTGCGCTGCATATATACTCATGAGTTGTGTGCTTGTTCTTTCGTGCTTCCGACTGCTTGTGGAATATGCATTTCCCTCGGCTAAATCTGGCCTTCTCCCTCTAGTTATTAGAGCAGGAGCTCAGTGAAATAGCTTAACTTGTCTTGTTGTGTTGCTGACTTTCGTTTCGTTCTCCGGTCTTAGATGATATCTTAATCTCTCCAAACGTAGTACTCATCTCTTGATCTCAATGTTTAGTGTTAGTTTTACGCCACGACAATTTAATCCGAAATATTTAGTCACTGACCAATCATAGATTGGATTATTAATAACAGGCATTATTCAAAAGCCAATTACTGTCACCAGCTGACCTTTACATGATCAGCCTTTTACCGCATTTACTGACAAAATAGCTGTGTAATGATTGTTATGAACTGTAACCATTGCATCTATTTCACTCTTCAATGCATTACTCTTTAGTAGTATGTTAAGTTTGGACTTTT-ATTGACATTATCAAGATACTCACTACTTTATAGTTGACTTGAAGTATTTTTAAATATAAATGC-AATAATGTGACAATTCTTCTACTATCATAGTTTTGCTCTCCTTTTTGTTATTAACTTTAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATATTTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTATCTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAATTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCAACAATAAAACAT] [+] EMBL CD081128 [TTCAAAAGAGCACANATTTTACCCCAAGTTTTTATTTCCCACTTGGAAAGACCTTAAATGTCATTGGTTCGTTTCCTCTTTTAGTACACTATTTTGTGACATTTCCTAAGAACATTTTTGCGCTGCATATATACTCATGAGTTGTGTGCTTGTTCTTTCGTGCTTCCGACTGCTTGTGGAATATGCATTTCCCTCGGCTAAATCTGGCCTTCTCCCTCTAGTTATTAGAGCAGGAGCTCAGTGAAATAGCTTAACTTGTCTTGTTGTGTTGCTGACTTTCGTTTCGTTCTCCGGTCTTAGATGATATCTTAATCTCTCCAAACGTAGTACTCATCTCTTGATCTCAATGTTTAGTGTTAGTTTTACGCCACGACAATTTAATCCGAAATATTTAGTCACTGACCAATCATAGATTGGATTATTAATAACAGGCATTATTCAAAAGCCAATTACTGTCACCAGCTGACCTTTACATGATCAGCCTTTTACCGCATTTACTGACAAAATAGCTGTGTAATGATTGTTATGAACTGTAACCATTGCATCTATTTCACTCTTCAATGCATTACTCTTTAGTAGTATGTTAAGTTTGGACTTTT ATTGACATTATCAAGATACTCACTACTTTATAGTTGACTTGAAGTATTTTTAAATATAAATGC AATAATGTGACAATTC ] [-] EMBL CD074951 [ TAGTACTCATCTCTTGATCTCAATGTTTAGTGTTAGTTTTACGCCACGACAATTTAATCCGAAATATTTAGTCACTGACCAATCATAGATTGGATTATTAATAACAGGCATTATTCAAAAGCCAATTACTGTCACCAGCTGACCTTTACATGATCAGCCTTTTACCGCATTTACTGACAAAATAGCTGTGTAATGATTGTTATGAACTGTAACCATTGCATCTATTTCACTCTTCAATGCATTACTCTTTAGTAGTATGTTAAGTTTGGACTTTTAATTGACATTATCAAGATACTCACTACTTTATAGTTGACTTGAAGTATTTTTAAATAT AATGCAAATAATGTGACAATTCTTCTACTATCATAGTTTTGCTCTCCTTTTTGTTATTAACTTTAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATATTTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTATCTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAATTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCAACAATAAAACAT] consensusID : consensus_6007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [GCATCCGATAAGTCATTCAGTTCTATCTGCTTGTATCGCAGAAATCGTTGCTTGTATTATAAGAGTACCCTGTGAAGTGGTGAAACAGAGAACGCAAAATCAGCCTGTTCATGGTGTTTCAACTGTGTTTCTACAGACTTTACGTAATGAGGGAATTCGTGGATTTTACAGAGGATATGTCAGCACATTATCACGAGAAATCCCATTTTCACTCATTCAGTATCCCATATGGGAAAAATTAAAGTATATGACTATTGAATGGAACAGAAACTCGATTGGAACCGATGACATTACAGACCCAACAGCGTCCCAATTAAGGGCTTGGCAGTCAGCTATGTGTGGGTGCTTAGCTGGCACAATAGCTGGCGCTGTAACTACACCTTTAGATGTGGCCAAAACTCGAATAATGTTGGCTGAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATATTTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTATCTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAATTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCCTCAATAAAACAT] [-] EMBL CD077323 [GCATCCGATAAGTCATTCAGTTCTATCTGCTTGTATCGCAGAAATCGTTGCTTGTATTATAAGAGTACCCTGTGAAGTGGTGAAACAGAGAACGCAAAATCAGCCTGTTCATGGTGTTTCAACTGTGTTTCTACAGACTTTACGTAATGAGGGAATTCGTGGATTTTACAGAGGATATGTCAGCACATTATCACGAGAAATCCCATTTTCACTCATTCAGTATCCCATATGGGAAAAATTAAAGTATATGACTATTGAATGGAACAGAAACTCGATTGGAACCGATGACATTACAGACCCAACAGCGTCCCAATTAAGGGCTTGGCAGTCAGCTATGTGTGGGTGCTTAGCTGGCACAATAGCTGGCGCTGTAACTACACCTTTAGATGTGGCCAAAACTCGAATAATGTTGGCTGAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATATTTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTATCTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAATTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCCTCAATAAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6007#0 TTCAAAAGAGCACANATTTTACCCCAAGTTTTTATTTCCCACTTGGAAAGACCTTAAATG 60 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 TCATTGGTTCGTTTCCTCTTTTAGTACACTATTTTGTGACATTTCCTAAGAACATTTTTG 120 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 CGCTGCATATATACTCATGAGTTGTGTGCTTGTTCTTTCGTGCTTCCGACTGCTTGTGGA 180 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 ATATGCATTTCCCTCGGCTAAATCTGGCCTTCTCCCTCTAGTTATTAGAGCAGGAGCTCA 240 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 GTGAAATAGCTTAACTTGTCTTGTTGTGTTGCTGACTTTCGTTTCGTTCTCCGGTCTTAG 300 consensus_6007#1 ---------------------------------------------------GCATCCGAT 9 ** * consensus_6007#0 ATGATATCTTAATCTCTCCAAACGTAGTACTCATCTCTTGATCTCAATGTTTAGTGTTAG 360 consensus_6007#1 AAGTCATTCAGTTCTATCTGCTTGTATCGCAGAAATCGTTGCTTGTATTATAAGAGTACC 69 * * ** *** ** *** * * ** * * ** * ** ** consensus_6007#0 TTTTACGCCACGACAATTTAATCCGAAATATTTAGTCACTGACCAATCATAGATTGGATT 420 consensus_6007#1 CTGTGAAGTGGTGAAACAGAGAACGCAAAATCAGCCTGTTCATGGTGTTTCAACTGTGTT 129 * * ** * ** ** ** * * * * ** ** consensus_6007#0 ATTAATAACAGGCATTATTCAA-AAGCCAATTACTGTCACCAGCTGACCTTTACATGATC 479 consensus_6007#1 TCT----ACAGACTTTACGTAATGAGGGAATTCGTGGATTTTACAGAGG---ATATG-TC 181 * **** * *** ** ** **** ** * ** * *** ** consensus_6007#0 AGCCTTTTACCGCATTTACTGACAAAATAGCTGTGTAATGATTGTTATGAACTGTAACCA 539 consensus_6007#1 AGCACATTATCACGAGAAATCCCATTTTCACT---CATTCAGTATCCCATATGGGAAAAA 238 *** *** * * * * ** * ** * * * * * * * ** * consensus_6007#0 TTGCATCTATTTCACTCTTCAATGCATTACT--CTTTAGTAGTAT-GTTAAGTTTGGACT 596 consensus_6007#1 TTA-AAGTATATGACTATTGAATGGAACAGAAACTCGATTGGAACCGATGACATTACAGA 297 ** * *** * *** ** **** * * ** * * * * * * * ** * consensus_6007#0 TTTATTGACATTATCAAGATACTCACTACTTTATAGTTGACTTGAAGTATTTTTAAATAT 656 consensus_6007#1 CCCA---ACAGCGTCCCAAT--TAAGGGCTTGGCAGTCAGCTATGTGTGGGTGCTTAGCT 352 * *** ** ** * * *** *** ** ** * * * consensus_6007#0 AAATGCAATAATGTGACAATTCTTCTACTATCATAGTTTTGCTCTCCTTTTTGTTATTAA 716 consensus_6007#1 GG-CACAATAGC-TGGCGCTGTAACTACACCTTTAGATGTGGCCAAAACTCGAATAATGT 410 ***** ** * * **** *** * ** * * ** * consensus_6007#0 C--TTTAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATAT 774 consensus_6007#1 TGGCTGAGCCCAATTCTAATTTTGCATCTGGTCATATAATATACGCCATGCGAACAATAT 470 * ****************************************************** consensus_6007#0 TTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTAT 834 consensus_6007#1 TTCAAGAGAGTGGAATTTATGGGCTTTTCTCAGGTTTAATACCTCGGATCACATTACTAT 530 ************************************************************ consensus_6007#0 CTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAA 894 consensus_6007#1 CTGTTGGTGGAGCTATATTTCTTGGCATTTATGATATTTCTACCAGATTCTGGACTTTAA 590 ************************************************************ consensus_6007#0 TTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCAACAAT 954 consensus_6007#1 TTGTTCAAAATTCTAAAGATTAATGTAACCACATACTTGACATAGTTTATTTTCCTCAAT 650 ****************************************************** **** consensus_6007#0 AAAACAT 961 consensus_6007#1 AAAACAT 657 ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||