cluster # 6021

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Schistosoma mansoni
cluster # 6021 cluster # 6021 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6021#0 length = 432 sequences # 3

consensus_6021#1 length = 305 sequences # 1

consensusID : consensus_6021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 432
fasta sequence

                              [TAGGGGGTGTTTGGGAGGAAAAAGGAGAAAAGCAAAACTAAAAAGAATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAAACCACGTCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGCACAAAATAAAGAACCATGGCAAACTGGAAAACATTTGAAACAAATAGTTAATTATATTATTACTGGTGTGACAGTATTAGTTGTTGCTGTTCCTGAAGGTTACCACTTGCCGTCACTTTATCA]

[+] EMBL CD185550             [TAGGGGGTGTTTGGGAGGAAAAAGGAGAAAAGCAAAACTAAAAAGAATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTC                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD066463             [                       GGAGAAAAGCAAAACTAAAAAGAATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAAACCACGTCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGCACAAAATAAAGAACCATGGCAAACTGGAAAACATTTGAAACAAATAGTTAATTATATTATTACTGGTGTGACAGTA                                               ]
[+] EMBL CD186775             [                                 AAAACTAAAAAGAATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAG AAAAAACCACGTCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGCACAAAATAAAGAACCATGGCAAACTGGAAAACATTTGAAACAAATAGTTAATTATATTATTACTGGTGTGACAGTATTAGTTGTTGCTGTTCCTGAAGGTTACCACTTGCCGTCACTTTATCA]




>consensus_6021#0
TAGGGGGTGTTTGGGAGGAAAAAGGAGAAAAGCAAAACTAAAAAGAATGGTAAAAAAGGG
AACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAG
AATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAAACCACG
TCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTA
TGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACA
TACATTTGCACAAAATAAAGAACCATGGCAAACTGGAAAACATTTGAAACAAATAGTTAA
TTATATTATTACTGGTGTGACAGTATTAGTTGTTGCTGTTCCTGAAGGTTACCACTTGCC
GTCACTTTATCA

consensusID : consensus_6021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [CAAGAAAAANAAAAAGGAGCAAAAGCAAAACTAAAAAGATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAACCACGTCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGCACAAA]

[+] EMBL CD059174             [CAAGAAAAANAAAAAGGAGCAAAAGCAAAACTAAAAAGATGGTAAAAAAGGGAACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAACCACGTCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGCACAAA]




>consensus_6021#1
CAAGAAAAANAAAAAGGAGCAAAAGCAAAACTAAAAAGATGGTAAAAAAGGGAACAAGAA
CTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAGAATAAAAC
AAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAACCACGTCGTAAAGA
ACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTATGTTGGTAC
ATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACATACATTTGC
ACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6021#0      TAGGGGGTGTTTGGGAGGAAAAAGGAGAAAAGCAAAACTAAAAAGAATGGTAAAAAAGGG 60
consensus_6021#1      -------CAAGAAAAANAAAAAGGAGCAAAAGCAAAACTAAAAAGA-TGGTAAAAAAGGG 52
                                     *  **** *   ******************* *************

consensus_6021#0      AACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAG 120
consensus_6021#1      AACAAGAACTCTGACAAGGTACCATCTGCTAATTCCGATGCTTATCAAATGAAATCAAAG 112
                      ************************************************************

consensus_6021#0      AATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAAACCACG 180
consensus_6021#1      AATAAAACAAAATCTGAATCTGATGCAGAACAGAGTTCAAAACCGAAGAAAAAA-CCACG 171
                      ****************************************************** *****

consensus_6021#0      TCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTA 240
consensus_6021#1      TCGTAAAGAACAATCTGTGTTACAAGCAAAATTAACTAAATTAGCCATACAAATTGGTTA 231
                      ************************************************************

consensus_6021#0      TGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACA 300
consensus_6021#1      TGTTGGTACATGTGTTGCAATAGCTACTGTTCTAATATTGATCATAAAATTTTCAGTACA 291
                      ************************************************************

consensus_6021#0      TACATTTGCACAAAATAAAGAACCATGGCAAACTGGAAAACATTTGAAACAAATAGTTAA 360
consensus_6021#1      TACATTTGCACAAA---------------------------------------------- 305
                      **************                                              

consensus_6021#0      TTATATTATTACTGGTGTGACAGTATTAGTTGTTGCTGTTCCTGAAGGTTACCACTTGCC 420
consensus_6021#1      ------------------------------------------------------------
                                                                                  

consensus_6021#0      GTCACTTTATCA 432
consensus_6021#1      ------------