cluster # 6050

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Schistosoma mansoni
cluster # 6050 cluster # 6050 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6050#0 length = 847 sequences # 2

consensus_6050#1 length = 471 sequences # 1
consensus_6050#2 length = 463 sequences # 1

consensusID : consensus_6050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence

                              [AAAACCATTATTATTGTTAGTAGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAATACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAAATGCTGTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAACATTGTACCAGAAGTAGAGTAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAACAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATATATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACTCGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA]

[+] EMBL CD114181             [AAAACCATTATTATTGTTAGTAGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAATACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAAATGCTGTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAAC                                                                                                                                                                                                                                                ]
[-] EMBL CD168679             [                                                                                                                                                                                                                                                                                                                                    TGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAGAAAATATGTAACATTGTACCAGAAGTAGAGTAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAACAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATATATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACTCGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA]




>consensus_6050#0
AAAACCATTATTATTGTTAGTAGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAATACAA
TTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAAATGCT
GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGA
AGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCAATAAGAGGCGGTCCCAAAA
TATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTC
CAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAA
ACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTG
ATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGAT
CAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACA
AAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAAANAAT
ATGTAACATTGTACCAGAAGTAGAGTAAGAAATTTGAAACCATAAACAAAACAAAGGTAG
GTCTTCTAAACAGTCGCAGATCGAACAGACGGTGAAAAATATCATGTTTGTCGGCACACA
TTTCTGTACAGCAATTACAACAATATATTTCCTTATCCTGACATTTTTCACCTTCATCCA
CCGACTTTAATTCTGATTTTCTACTCGCCAGACAACTACATTTGTACCCCAGTGAACACT
GAGATGA

consensusID : consensus_6050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCTGATAGTACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACTAACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAAATGTTTGGATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATAATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAAGACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGCACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTGATTAGT]

[+] EMBL CD131280             [GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCTGATAGTACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACTAACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAAATGTTTGGATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATAATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAAGACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGCACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTGATTAGT]




>consensus_6050#1
GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGA
AGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCTGATAGTACAGGAAAAGACA
AATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACTAACATTCAAAAACT
CAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAAATGTTTGGATAAAT
TCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATAATAAACTTAGTTAAG
AATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAAGACTTTCGGAGTTTG
AAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGCACAATTTTTTAACAT
ATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTGATTAGT

consensusID : consensus_6050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAAGAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAAACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAGGAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAA]

[-] EMBL CD188282             [GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAAGAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAAACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAGGAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAA]




>consensus_6050#2
GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAA
GAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAA
ACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAG
GAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACCAATAAG
AGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGT
AAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGC
CAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGG
CATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6050#0      ---AAAACCATTATTATTGTTAGT--AGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAA 55
consensus_6050#2      GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAA 60
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      TACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAA 115
consensus_6050#2      GAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAA 120
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      ATG-CTGTATAATAATAGGAA----CAACTGAAAATGCTGCCAAAACCA--TACCCAAAC 168
consensus_6050#2      ACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAG 180
consensus_6050#1      ------GTATAATAATAGGAA----CAACTGAAAATGCTGCCAAAACCA--TACCCAAAC 48
                             *   *   *    *     *   * * ***         * *  ***  * * 

consensus_6050#0      CAGAAATAATGAAGGCTGGATCATGTGATTG--AGTTAGATCAATTATATAACC------ 220
consensus_6050#2      GAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACC------ 234
consensus_6050#1      CAGAAATAATGAAGGCTGGATCATGTGATTG--AGTTAGATCAATTATATAACCTGATAG 106
                       *** *   *  *    **   ** ***     ** **   *      *  ***      

consensus_6050#0      ---AATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAG 277
consensus_6050#2      ---AATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAG 291
consensus_6050#1      TACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACT 166
                         *  ** ** *       ****    *  *     * ****   ** **  ** **  

consensus_6050#0      ACCATTTGTAAGA-CGATG-TAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCA 335
consensus_6050#2      ACCATTTGTAAGA-CGATG-TAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCA 349
consensus_6050#1      AACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAA 226
                      * ****   **   * **  ** ** * *       ** **  ** **  *    *   *

consensus_6050#0      TCATTAGCGGCCAGTCCCATACCAAACACGCTAG-AATAAACTGCCATAGACATA----A 390
consensus_6050#2      TCATTAGCGGCCAGTCCCATACCAAACACGCTAG-AATAAACTGCCATAGACATA----A 404
consensus_6050#1      ATGTTTG-GATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATA 285
                         ** * *   * * *    *** *** *  *  **    **    *   ** *    *

consensus_6050#0      ATGTAGTAAGTAACGGCATCAAACACGTTGATACACCA-----CATGCAAGAATCATGAA 445
consensus_6050#2      ATGTAGTAAGTAACGGCATCAAACACGTTGATACACCA-----CATGCAAGAATCATGAA 459
consensus_6050#1      ATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAA 345
                      **  * * *** * *   *     ** * * **  * *      **  **  *    ***

consensus_6050#0      GAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTC 505
consensus_6050#2      GAAA-------------------------------------------------------- 463
consensus_6050#1      GACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGC 405
                      **                                                          

consensus_6050#0      GCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAG 565
consensus_6050#2      ------------------------------------------------------------
consensus_6050#1      ACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTG 465
                                                                                  

consensus_6050#0      ACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAACATTGTACCAGAAGTAGAG 625
consensus_6050#2      ------------------------------------------------------------
consensus_6050#1      ATTAGT------------------------------------------------------ 471
                                                                                  

consensus_6050#0      TAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAA 685
consensus_6050#2      ------------------------------------------------------------
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      CAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATA 745
consensus_6050#2      ------------------------------------------------------------
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      TATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACT 805
consensus_6050#2      ------------------------------------------------------------
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      CGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA 847
consensus_6050#2      ------------------------------------------
consensus_6050#1      ------------------------------------------