These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 961 fasta sequence [CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGAACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGTTTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAACATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAATTTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAACTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTACATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAG-CCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGTCTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAATAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCTG] [+] EMBL CD118471 [CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGAACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGTTTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAACATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAATTTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAACTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTACATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAG CCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACA ] [-] EMBL CD083568 [ TCAGCCCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGTCTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAATAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCTG] [+] EMBL CD156172 [ GATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATCCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGg ] consensusID : consensus_6072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GACATCCACCAAGTAGCTGAAGATGGTTTCTAATTTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTCTGCTCCAAATTATTGCGGTGAATTTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA] [+] EMBL CD192075 [GACATCCACCAAGTAGCTGAAGATGGTTTCTAATTTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTCTGCTCCAAATTATTGCGGTGAATTTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6072#0 CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGA 60 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 ACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGT 120 consensus_6072#1 --------------------GACAT-CCACCAAGTAGCTGAAGATGGTTTCTAAT----- 34 * ** * * ** * * * ** **** * * consensus_6072#0 TTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAAC 180 consensus_6072#1 TTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTC---TGCTCCAAATTATTGCGGTGAAT 91 ** * * * * ** * ** ***** ** * ** * ** **** consensus_6072#0 ATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAAT 240 consensus_6072#1 TTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA------------------------ 127 ** *** * * ** * * ** consensus_6072#0 TTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAA 300 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 CTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTA 360 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 CATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAGCCCAACCATTAACATCTT 420 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTC 480 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAAC 540 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 AAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACG 600 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGAT 660 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTT 720 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTC 780 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 CAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGT 840 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 CTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAA 900 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 TAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCT 960 consensus_6072#1 ------------------------------------------------------------ consensus_6072#0 G 961 consensus_6072#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||