These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGCAATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGGCCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGGAACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTAAAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATCCATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCATTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAACAAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATNTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTTTTGAGCATATTCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGATACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTTCTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCATTAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCTTTTTATTAAGTGAACAATTTTCAACGAAAGTAC] [+] EMBL CD115706 [CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGCAATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGGCCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGGAACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTAAAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATCCATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCATTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAACAAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATNTATGGTTTA ] [-] EMBL CD157267 [ ATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTTTTGAGCATATTCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGATACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTTCTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCATTAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCTTTTTATTAAGTGAACAATTTTCAACGAAAGTAC] consensusID : consensus_6075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 468 fasta sequence [TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTTTTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAACTTGTCATG] [+] EMBL CD141482 [TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGACTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTT ] [+] EMBL CD114907 [ TTTCCTAGTTAAAAAACAAAAGATATCAAGAAAAATGGGTGATTTCGGGAGATTCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTTTTGAGCATATATTCGTCGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGATACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGATCATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGATAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTTTTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAACTTGTCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6075#0 CCTGGCACGTTGAACACACTGCACTATGAATGCAAAGCCGATATTGAAATGATGAATTGC 60 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 AATTGGAAACAAGTGTGAAGTACTGTCCATGACGGTTGGATGGAGAATGTTAATGTTTGG 120 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 CCTATGCTCCTCGACGGGGGGTAACAGGCGTAAGTAATAAGTCACCTGACGTAAACGAGG 180 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 AACTGAGTAAATTCTTTACGAAACTGTACAAAGCGGATGAGAATGCAGTTCTACCTGGTA 240 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 AAGATTACAAACTCAATTTACAAGATACGCTCGATTCGTTTGTAGACTTATCACCTGATC 300 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 CATTGTTTGAATTTGTTGATGAAGATATATTCAAGAACAGACCTACATTCGCAAAGTTCA 360 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 TTGCATTACTGGATAATTACAATCCTCAAGTTGGTGTCACTGAAATTGTCACAGTGGAAC 420 consensus_6075#1 ------------------------------------------------------------ consensus_6075#0 AAAATAGAGAGGAAGATGACTCTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGA 480 consensus_6075#1 ---------------------TTATCAATGAATTATTAAAAACGAAAGTCATGAAAATGA 39 ************************************** consensus_6075#0 CTTATGATTTCCTAGTTAAAAAACANAAGATATCAAGAAAAATGGGTGATTTCGGGAGAT 540 consensus_6075#1 CTTACGATTTCCTAGTTAAAAAACAAAAGATATCAGGAAAAATGGGTGATTTCGGGAGAT 99 **** ******************** ********* ************************ consensus_6075#0 TCTTGAAGGATNTATGGTTTAAGAGATATAAACGTAGAAGAACTGGAGATTCACCAGCTT 600 consensus_6075#1 TCTTGAAGGATTTATGGTTCAAGAGATATAAACGTAGAAGAACTGGAGATACATCAGCTT 159 *********** ******* ****************************** ** ****** consensus_6075#0 TTGAGCATAT--TCGTTGGTGAACATAAGAAATTCATAATGCTTGGATTACACAATTGGA 658 consensus_6075#1 TTGAGCATATATTCGTTGGTGAACATAAAAATTCCATAATGCTTGGATTACATAATTGGA 219 ********** **************** ** * ****************** ******* consensus_6075#0 TACAATTTTATCTGAAAGAAAAGAAGAATGACATAAATTATTATGGATGGGAGAAGAGTT 718 consensus_6075#1 TACAACTTTATCTGAAAGAAAAGAAGAATGAAATAAATTATTATGGATGGAAGAAGAGAT 279 ***** ************************* ****************** ******* * consensus_6075#0 CTTGTCATGAACAATTAATCAGTATAGAATATATTGATGAAAATAAATATAACAAACCAT 778 consensus_6075#1 CATGTGATGACCGGCTACTCAGTCTAACTTATATCGATGAAAATAAATATGTAAAACCGA 339 * *** **** * ** ***** ** ***** *************** ***** consensus_6075#0 TAGGCTCAGTATTTATTGGATCATCACCGGAATTCGACATTGCTATTTATACAGTCACCT 838 consensus_6075#1 TAGGAGGTTTTTTTGTTGGATCCTCTCCAGAATTTGATATTGCTGTATACACCGTTGCTT 399 **** * *** ******* ** ** ***** ** ****** * ** ** ** * * consensus_6075#0 TTTTATTAAGTGAA----CAATTTTCAACGAAAGTAC----------------------- 871 consensus_6075#1 TTGCATTATATCCAGCATCAGCATTTGATGTAAATATAGCCGGATGTAAAATACGTATAA 459 ** **** * * ** ** * * ** ** consensus_6075#0 --------- consensus_6075#1 CTTGTCATG 468 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||