These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGCGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGATAAAAAAGCGGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCAGAACAAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGGACCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGATATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGTTCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTGGAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTTACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGATCANA] [+] EMBL CD128118 [GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGCGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGATAAAAAAGCGGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCAGAACAAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGGACCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGA ] [+] EMBL CD116099 [ CCCGTAAGAACGAGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCTGATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGATATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGTTCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTGGAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTTACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGATCANA] consensusID : consensus_6108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGTGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGATGAATTATTTGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCACACCAAATGCTAGCAATCAAGATGTACCCCTCATTTCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGCACCCGTATGAACGAGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCTGAT] [+] EMBL CD127625 [AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGAGGACTATCTAATCAAGGCTGTACATCTCTTGAAAGGTGTGTCTTACAAAGGCGTGTCTACACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGATGAATTATTTGGAAGCTGAAGACTTAAAGTTGTGTAGTTCTGCACACCAAATGCTAGCAATCAAGATGTACCCCTCATTTCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGCACCCGTATGAACGAGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCTGAT] consensusID : consensus_6108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [GTTGTGTAGTTCTGCAGAACGAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACGGGACCCGTAAGAACGAGGAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAAGTCTGTGGAATACAG] [+] EMBL CD181249 [GTTGTGTAGTTCTGCAGAACGAAAGCAAGCAATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATCCAACGGGACCCGTAAGAACGAGGAGTCGAAAACCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAAGTCTGTGGAATACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6108#0 GAGAAAAGATAGGGAGTCAAATCATTCTCGAAATGGGCCTTCTACTGATTCCGTTAGTGA 60 consensus_6108#1 --------------AGTCAAATCATTCTCTGAATGGGCCTTCTACTGATTCGCTTAGTGA 46 consensus_6108#2 --------------------------------------GTTGTGTAGTTCTGCAGAACGA 22 ** * * * * ** consensus_6108#0 GGACTATCTAATCAAGGCTGTA-CATCTCTTGAAAGGCGTGTC--TTACAAAGGCGTGTC 117 consensus_6108#1 GGACTATCTAATCAAGGCTGTA-CATCTCTTGAAAGGTGTGTC--TTACAAAGGCGTGTC 103 consensus_6108#2 AAGCAAGC-AATCAAGATGTTATCCTCATTTCGTAATTGTGGTAATCCTGAGGGTTTATC 81 * * * ******* ** * ** ** * *** * * ** * ** consensus_6108#0 TAC----ACCGACAGTAATCAGGCGTCGTCGTTCAGATTACGAACAACGTCAAGCTGAGA 173 consensus_6108#1 TAC----ACCGACAGTAATCAGGCGTCTTCGTTCAGATTACGAACAACGTCAAGCTGAGA 159 consensus_6108#2 CAACGGGACCCGTAAGAACGAGGAGTCGAAAACCA-ATTGCATATTTGCTTGACCTGAAA 140 * *** * ** *** *** ** *** * * * * **** * consensus_6108#0 TAAAAAAGCGGGAAGCTGAAGACTTAAAG--TTGTGTAGTTCTGCAGAACAAAAGCAAGC 231 consensus_6108#1 TGAATTATTTGGAAGCTGAAGACTTAAAG--TTGTGTAGTTCTGCACACCAAATGCTAGC 217 consensus_6108#2 TTACCCTATAAAGTGAATGATGCTGAAGGGACAGCAAAGTTTGATAAATCTACTCACACT 200 * * * * ** ** * * **** * * * * * consensus_6108#0 AATCAAGATGTTATCCTCATT-TCGTAATTGTGGTAATCCTGAGGGTTTATCCAACAGG- 289 consensus_6108#1 AATCAAGATGTACCCCTCATT-TCGTAATTGTGGTAATCCTGAGGGTCTATCCTACGGGC 276 consensus_6108#2 CTATGCATTACACTACCGACTGTTAAAAACGTGGAATCAACTACTTGTAAGCCTACTGAC 260 * * * * * ** **** * * * ** ** * consensus_6108#0 ACCCGTAAGAACG---AGGAGACTGTCAAATTGGATGAAATAAGTACACCTACTAAACCT 346 consensus_6108#1 ACCCGTATGAACG---AGGAGACTGTTCCATTGGATGAAACAAGTGCTCCTACTAAACCT 333 consensus_6108#2 AGTACTATAAATGGTGATGAAAAAGATGTAGAGAACGAAACAAA---GTCTGTGGAATAC 317 * ** ** * * ** * * * * * **** ** ** ** consensus_6108#0 GATTATTCTATAACCTACAGTTCAGATTTTGACCTAAGTAACTGTCGATATTCTAGTGAT 406 consensus_6108#1 GAT--------------------------------------------------------- 336 consensus_6108#2 AG---------------------------------------------------------- 319 consensus_6108#0 ATGAATCCTTTATGTCCACCGGATCGTTTAAAAATCAATGTTAAATTGCCTGGTTTAAGT 466 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 TCATCTTCATGTGCTGACTTGGAAGTGACAGAAATGCACATACATTTGAGTAGTCGAAAA 526 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 CCAATTGCATATTTGCTTGACCTGAAATTACCCTATAAAGTGAATGATGCTGAAGGGACA 586 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 GCAAAGTTTGATAAATCTACTCACACTCTATGCATTACACTACCGATTGTTAAAAACGTG 646 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 GAGTCAACTACTTGTAAGCCTACTGACAGTACTATAAATGGTGATGAAAAAGATGTAGAG 706 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 AACGAAACANAGTCTGTGGAATACAGTTCTACAACAAACACTTCTGATCATGAATCAGTT 766 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 ACATTAAGTGCAGCAACTCGAANACGTGCACGACGAANACGTCGGANACAACGAACTAGA 826 consensus_6108#1 ------------------------------------------------------------ consensus_6108#2 ------------------------------------------------------------ consensus_6108#0 TCANA 831 consensus_6108#1 ----- consensus_6108#2 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||