These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 496 fasta sequence [GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGTTTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTTGTATGGATCAGTTGAAGTCATTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAGCCTTCAAACCACTGTAA] [+] EMBL CD140181 [GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGTTTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTTGTATGGATCAGTTGAAGTCA ] [-] EMBL CD154841 [ TGTTCTTGTTGAAGTTTTTACTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTT ] [-] EMBL CD199678 [ TAGCTTCAGATAAGTCCTGTTTGACTAAGACTGAGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGGGGAGTTGTATGGATCAGTTGAAGTTTTTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAGCCTTCAAACCACTGTAA] consensusID : consensus_6129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TTTCGGAGTTACTGAGAGACAATTTACAGTGGTTTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTTTTATTAAATATGTACCTATTAGTATGTTGATGGTTAGTATGGACCATGTTGGGAAGTACCAACAATATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAGCTCTTCTATATAAATTATGTGGTTTATTGGTGGGATAACTTGTTCTGGAATTGTCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGTATTCATCGATGACACACACAGGTTTCCAGTTTTCAGTGGCAGGTACATTCAGTGCATTGATTTTTTATGGTAGTTACTCAGCAAGAGACA] [+] EMBL CD187433 [TTTCGGAGTTACTGAGAGACAATTTACAGTGGTTTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTTTTATTAAATATGTACCTATTAGTATGTTGATGGTTAGTATGGACCATGTTGGGAAGTACCAACAATATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAGCTCTTCTATATAAATTATGTGGTTTATTGGTGGGATAACTTGTTCTGGAATTGTCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGTATTCATCGATGACACACACAGGTTTCCAGTTTTCAGTGGCAGGTACATTCAGTGCATTGATTTTTTATGGTAGTTACTCAGCAAGAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6129#0 GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGT 60 consensus_6129#1 ---------------------------TTTCGGAGTTACTGAGAGACAATTTACAGTGGT 33 * * * **** ** * * * ** consensus_6129#0 TCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATT 120 consensus_6129#1 TTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTT 93 * * ** * * * *** **** ** * * ** ** consensus_6129#0 TCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGT 180 consensus_6129#1 TTATTAAATATGTA-CCTATTAGTATGTTGATGGTTAGT----------ATGGACCATGT 142 * * ****** * *** * * *** *** * ** * *** consensus_6129#0 TTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAA-AAACCCAAG 239 consensus_6129#1 T------GGGAAGTACCAACAA-TATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAG 195 * * * ******* * * * ** * ** * * ** **** ** consensus_6129#0 GTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAA 299 consensus_6129#1 CTCTTCTATATAAATTATGTGGTT----TATTGGTGGGATAACTTGTTCTGGAATTG--- 248 ***** *** * ** * * *** ******* **** ** consensus_6129#0 AATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTT 359 consensus_6129#1 --TCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGT 306 ** * *** * *** * * * ** ** ** * * * * * consensus_6129#0 ATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTT 419 consensus_6129#1 ATTCATCGATGACACACACAGGTTTCC-------AGTTTTCAGTGGCAGGTACATTCAGT 359 ** * * * ** * * *** *** ** * * * * * consensus_6129#0 GTATGGATCAGTTGAAGTCATTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAG 479 consensus_6129#1 GCATTGATTTTTTATGGT-AGTTACTCAGCAAGAGACA---------------------- 396 * ** *** ** ** * ** *** ** ** consensus_6129#0 CCTTCAAACCACTGTAA 496 consensus_6129#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||