These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 285 fasta sequence [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC] [+] EMBL BG932225 [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC] [+] EMBL BG932337 [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCcg ] consensusID : consensus_6136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 199 fasta sequence [TACTCTAGAGGATCCCAGCAATCGCTGATGAGGCATCAATCGCTGATGAGGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC] [+] EMBL CD129899 [TACTCTAGAGGATCCCAGCAATCGCTGATGAGGCATCAATCGCTGATGAGGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC] [+] EMBL CD063609 [ CAGCAACTATCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6136#0 GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCT--TGCG 58 consensus_6136#1 ----------------------------TACTCTAGAGGATCCCAGCAATCGCTGATGAG 32 **** * ** * ** **** ** * consensus_6136#0 ATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAG 118 consensus_6136#1 GCATCAATCGCTGATGAG---GCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAG 89 * * **** * * *************************************** consensus_6136#0 TTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTT 178 consensus_6136#1 TTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTT 149 ************************************************************ consensus_6136#0 TTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGA 238 consensus_6136#1 TTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC---------- 199 ***************************************** ** **** consensus_6136#0 TTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC 285 consensus_6136#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||