These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCTGAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGTTCTCACAGCTTGTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTCGGTGCAGACTTCAGTTGTACTACTATACCAGGAGGCTATACTGCTGCCTCTTGTGGCTTCTACTGAGTGTGTCAGGACGTCTTATTGCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCACTGAGAGACATGTCACTGATTCGTCAAATTACATGCCTTCTTCGCCAGATGCAGAGAAAACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGGTCACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTTCTAACAATCCTTCGTCTGCTAAT] [+] EMBL CD167554 [AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCTGAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGTTCTCACAGCTTGTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTCGGTGCAGACTTCAGTTGTACTACTATACCAGGAGGCTATACTGCTGCCTCTTGTGGCTTCTACTGAGTGTGTCAGGACGTCTTATTGCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCACTGAGAGACATGTCACTGATTCGTCAAATTACATGCCTTCTTCGCCAGATGCAGAGAAAACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGGTCACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTTCTAACAATCCTTCGTCTGCTAAT] consensusID : consensus_6154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 445 fasta sequence [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATTTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACATCAACGTGTCCGAATGAGCATGCATTATGCAACGGAA] [+] EMBL CD160154 [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATTTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACATCAACGTGTCCGAATGAGCATGCATTATGCAACGGAA] [+] EMBL CD160186 [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGGAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATTTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTATAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATCTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACA ] consensusID : consensus_6154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CAGGTTCTTATCCTGGATTTCATTCACCAGAAAACAAACAACTTATATCTCACACACAGTACACCAAGGACTTGTTAGTCAAACCAGTCAGTCGTAATGTTTCACCAGTCTTGGGTAGACAGTTGATTGAATGGCTTATCGATCAAGGTATTTCGGTCTCAGATTGCAATGTTGAGGGTCAAACTCCTCTCCACTTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTGTTTGCTACGACGCGGTGCCGAACCAAACGTTGCGGACTGGCATGGTTTCACACCTTTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTTGGTGCAGACTTAAGTTGT] [-] EMBL CD190009 [CAGGTTCTTATCCTGGATTTCATTCACCAGAAAACAAACAACTTATATCTCACACACAGTACACCAAGGACTTGTTAGTCAAACCAGTCAGTCGTAATGTTTCACCAGTCTTGGGTAGACAGTTGATTGAATGGCTTATCGATCAAGGTATTTCGGTCTCAGATTGCAATGTTGAGGGTCAAACTCCTCTCCACTTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTGTTTGCTACGACGCGGTGCCGAACCAAACGTTGCGGACTGGCATGGTTTCACACCTTTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTTGGTGCAGACTTAAGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6154#0 AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCT 60 consensus_6154#2 ------------------------------------------------------------ consensus_6154#1 ------------------------------------------------------------ consensus_6154#0 GAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGT 120 consensus_6154#2 ------------------------------------------------------CA-GGT 5 consensus_6154#1 --------------------------------------------------GGAGTTTGAC 10 * consensus_6154#0 TCTCACAGCTTGTACACCTGGCTGCTAAATAT---GGACATTCTCATATTATACAGCTCT 177 consensus_6154#2 TCTTAT--CCTGGATTTCATTCACCAGAAAAC---AAACAA-CTTATATCTCACACACAG 59 consensus_6154#1 CCTCAA--CATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTG 68 ** * * * * * ** * * ** * consensus_6154#0 TAGTTCAAGGATTCGGTG--CA----GACT---TCAGTTGTACTACTATACCAGGA--GG 226 consensus_6154#2 TACACCAAGGACTTGTTAGTCA----AACCAG-TCAGTCGTAATGTTTCACCAGTCTTGG 114 consensus_6154#1 TCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGG 128 * * * ** * * ** ** ** * * ** ** consensus_6154#0 -CTATACTGCT------GCCTCTTGTGGCTTCTA--CTGAGTGTGTCAGGACGTCTTATT 277 consensus_6154#2 -GTAGACAGTT------GATTGA-ATGGCT--TA--TCGA-----TCAAGGTATTTCGGT 157 consensus_6154#1 AGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATC 188 * ** * * * * * * ** * * consensus_6154#0 GCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCAC 337 consensus_6154#2 CTCAGATTGCAATGTTGA-------------GGGTCAAACTCCTC----------TCCAC 194 consensus_6154#1 TTTC--CTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAA-----TCAA 241 * * * * * * * * ** consensus_6154#0 TGAGAGACATGTCACTGATTCGTCAAATTACATGCCTT--CTTCGCCAGATGCAGAGAAA 395 consensus_6154#2 TTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTG--TTTGCTACGACGCGGTGCCG 252 consensus_6154#1 CAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAA 301 * * * * * * * ** ** ** consensus_6154#0 ACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGG--T 453 consensus_6154#2 AACCAAA-------CGTTGCGGACTGGCATGGTTTCACACCTTTACAC----CTGGC--T 299 consensus_6154#1 TGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAAT 361 * ** ** * * * * * consensus_6154#0 CACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTT 513 consensus_6154#2 GCTAAATA-TGGACATTCT---CATATTATACAGCTCTTAGT----TCAAGGATTTGGTG 351 consensus_6154#1 CCTCAGCATTTGG--GTCAGAACCTGCTG-ATAGTAACAGGTGCACCACATCAACGTGTC 418 * * * * * * * * * * * consensus_6154#0 CTAACAATCCTTCGTCTGCTAAT---- 536 consensus_6154#2 CAGACT-TAAGTTGT------------ 365 consensus_6154#1 CGAATGAGCATGCATTATGCAACGGAA 445 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||