These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 462 fasta sequence [ACTATGTTTTGCTTTTTGCTGTTATCTGCGTTATAATCAACGCTATTACTATTGTTTTGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAA-TGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGATCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG] [+] EMBL CD065829 [ACTATGTTTTGCTTTTTGCTGTTATCTGCGTTATAATCAACGCTATTACTATTGTTTTGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAA TGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGATCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG] [+] EMBL CD065805 [ TAATTGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCCACGAACGAAT ] consensusID : consensus_6172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATTGATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATG] [+] EMBL CD063739 [CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATTGATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATG] consensusID : consensus_6172#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [GCAAAAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCAATACAATAAGAAATAGATCACGTCCATTGCCTCCACTGCCACCTACACCGATTCGATCATCGTCGATTACACGGACAGAGTATTCAATCACTCCTCATCACCATCAATTGAAACAAATCAATCCTATAAGTAATAGTATAGGTGGAATTACACTTAATAGTAATGAAACAGCTCCCTCCGTACCTGAGCGGA] [+] EMBL CD077868 [GCAAAAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCAATACAATAAGAAATAGATCACGTCCATTGCCTCCACTGCCACCTACACCGATTCGATCATCGTCGATTACACGGACAGAGTATTCAATCACTCCTCATCACCATCAATTGAAACAAATCAATCCTATAAGTAATAGTATAGGTGGAATTACACTTAATAGTAATGAAACAGCTCCCTCCGTACCTGAGCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6172#0 ------------------------------------------------------ACTATG 6 consensus_6172#1 CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATT 60 consensus_6172#2 ------------------------------------------------------------ consensus_6172#0 TTTTGCTTTTTGCTGTTATC--TGCGTTATAATCAA---CGCTATTACTATTGTTT-TGA 60 consensus_6172#1 GATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGA 120 consensus_6172#2 --------------------------------------------------------GCAA 4 * consensus_6172#0 TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA 120 consensus_6172#1 TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA 180 consensus_6172#2 AAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCA-ATACAATA 63 * * ** *** * * * * * * * * **** * * ** consensus_6172#0 C-AGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTG 179 consensus_6172#1 CCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTG 240 consensus_6172#2 AGAAATAGATCACGTCCATTGCCTCCACTG------CCACCTACACCGATTCGATCATCG 117 * **** * ** * ** *** * * *** * * * ** * consensus_6172#0 TTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTT 239 consensus_6172#1 TTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTT 300 consensus_6172#2 TCGATTACACGGACAG--AGTATTCAATCACTCCTCATCACCATCAATTGAAACAA---- 171 * * * * * * ** * **** * **** ***** consensus_6172#0 GTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAG 299 consensus_6172#1 GTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAG 360 consensus_6172#2 ATCAATCCTATAAG---TAATAGTATAGGTGGAATTACACTTAATA--GTAATGAAACAG 226 * *** ** * * ** * ** ** * * ***** * * ** ** consensus_6172#0 TTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCA 359 consensus_6172#1 TTGGATCTATTTATCGGTGATG-------------------------------------- 382 consensus_6172#2 CTCCCTCCGTACCTGAGCGGA--------------------------------------- 247 * ** * * * * consensus_6172#0 ACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGA 419 consensus_6172#1 ------------------------------------------------------------ consensus_6172#2 ------------------------------------------------------------ consensus_6172#0 TCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG 462 consensus_6172#1 ------------------------------------------- consensus_6172#2 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||