These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGACGAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCATGGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTTAATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTGTTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACTACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATCGATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT] [+] EMBL CD184381 [TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGACGAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCATGGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTTAATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTGTTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACTACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATCGATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT] consensusID : consensus_618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACTACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATCGATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNNCCNNNCNNNGAG] [+] EMBL AA917184 [CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACTACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATCGATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNNCCNNNCNNNGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_618#0 TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGAC 60 consensus_618#1 ------------------------------------------------------------ consensus_618#0 GAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCAT 120 consensus_618#1 ------------------------------------------------------------ consensus_618#0 GGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTT 180 consensus_618#1 ------------------------------------------------------------ consensus_618#0 AATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTG 240 consensus_618#1 ------------------------------------------------------------ consensus_618#0 TTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACT 300 consensus_618#1 ------------CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACT 48 ****************************** * * ***** ****** consensus_618#0 ACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATC 360 consensus_618#1 ACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATC 108 ********* *********************************** ************ consensus_618#0 GATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT 420 consensus_618#1 GATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNN-CCNNNCNNNGAG----------- 156 ************* ********** * * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||