cluster # 6188

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Schistosoma mansoni
cluster # 6188 cluster # 6188 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6188#0 length = 509 sequences # 3

consensus_6188#1 length = 288 sequences # 1

consensusID : consensus_6188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 509
fasta sequence

                              [AGGTTGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGTGTCAAGAAAGATTTGAAATTCGAAAACTCAAGGAAATGTTCATTAAAATCGCTATTAAGTGATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCTAAATATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATGGTTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTCCCTATAATGTTGACAAACGACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGTTATATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCATTAAATTTGGAACCAGATGGAAATTGGATCACGTTTTTTCGCGATAATGAAANTTTACTTCAAATTAATAAAGACTGTCAGAGACTATGTC]

[+] EMBL AI974956             [AGGTTGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGTGTCAAGAAAGATTTGAAATTCGAAAACTCAAGGAAATGTTCATTAAAATCGCTATTAAGTGATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCTAAATATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATGGTTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTCCCTATAATGTTGACAAACGACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGTTATATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCATTAAATTTGGAACCAGATGGAAATTGGATCACGTTTTTTCGCGATAATGAAANTTTACTTCAAATTAATAAAGACTGTCAGAGACTATGTC]
[+] EMBL AI975705             [    TGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGTGTCAAGAAAGATTTGAAATTCGAAAACTCAAGGAAATGTTCATTAAAATCGCTATTAAGTGATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCTAAATATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATGGTTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTCCCTATAATGTTGACAAACGACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGTTATATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCATTAAATTTGGAACCAGATGGAAATTGGATCACGTTTTTTCGCGATAATGAAAATTTACTTCAGATTAATAAAGACTGTCAGAGACTATGTC]
[+] EMBL CD184808             [    TGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGTGTCAAGAAAGATTTGAAATTCGAAAACTCAGGGAAATGTTCATTAAAATCGCTATTAAGTGATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCTAAATATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATGGTTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTCCCTATAATGTTGACAAACGACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGTTATATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCATTAAATTTGGAA                                                                               ]




>consensus_6188#0
AGGTTGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGT
GTCAAGAAAGATTTGAAATTCGAAAACTCAAGGAAATGTTCATTAAAATCGCTATTAAGT
GATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCT
AAATATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATGG
TTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTCC
CTATAATGTTGACAAACGACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGTTA
TATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCATT
AAATTTGGAACCAGATGGAAATTGGATCACGTTTTTTCGCGATAATGAAANTTTACTTCA
AATTAATAAAGACTGTCAGAGACTATGTC

consensusID : consensus_6188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [ACAATAAATCAGCATCAATCGTACTACCTAAAGCTTTCAATTATTACAAGAATGTCTAGTAAATCACTTAATGCGATTTAATGAACATTTCCTTGAGTTTTCGAATTTCAAATCTTTCTAAAACCAATAAACATGTGAAAAAAGGTTAAGTGCCATAGAGAGACTGGTACAAATGTGAGTTAGTTTAAATGTCCATTACACATCAGAACAGCGAGATGAAATTCATATAATAGAAAACAAGATAACTGAAATGACTTAGTAGTTATGAGGATGACTGAATACTGAGAA]

[+] EMBL CD090843             [ACAATAAATCAGCATCAATCGTACTACCTAAAGCTTTCAATTATTACAAGAATGTCTAGTAAATCACTTAATGCGATTTAATGAACATTTCCTTGAGTTTTCGAATTTCAAATCTTTCTAAAACCAATAAACATGTGAAAAAAGGTTAAGTGCCATAGAGAGACTGGTACAAATGTGAGTTAGTTTAAATGTCCATTACACATCAGAACAGCGAGATGAAATTCATATAATAGAAAACAAGATAACTGAAATGACTTAGTAGTTATGAGGATGACTGAATACTGAGAA]




>consensus_6188#1
ACAATAAATCAGCATCAATCGTACTACCTAAAGCTTTCAATTATTACAAGAATGTCTAGT
AAATCACTTAATGCGATTTAATGAACATTTCCTTGAGTTTTCGAATTTCAAATCTTTCTA
AAACCAATAAACATGTGAAAAAAGGTTAAGTGCCATAGAGAGACTGGTACAAATGTGAGT
TAGTTTAAATGTCCATTACACATCAGAACAGCGAGATGAAATTCATATAATAGAAAACAA
GATAACTGAAATGACTTAGTAGTTATGAGGATGACTGAATACTGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6188#0      AGGTTGGGGCGGGTATAATATTTATTTCTGTTTGAACTGTCCCCGTGTAAAATAAAGCGT 60
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      GTCAAGAAAGATTTGAAATTCGAAAACTCAAGGAAATGTTCATTAAAATCGCTATTAAGT 120
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      GATTTTACTAGAACACTTCTCTGTAATGAATTCGAAATGCTCTAGACATGAACAAATGCT 180
consensus_6188#1      -------------------------------------------------------ACAAT 5
                                                                             *   *

consensus_6188#0      AAAT-ATTATAAATGGAGAGAACGTAAATATTGAAGAACTTAAAAGATTGTCTATTGATG 239
consensus_6188#1      AAATCAGCATCAATCGT-ACTACCTAAAGCTTTCAATTATTACAAGAATGTCTAGTAA-- 62
                      **** *  ** *** *  *  ** ****  **  *    *** **** ****** * *  

consensus_6188#0      GTTGTCCAGATTCTAATGGGATCCGTTCAAAAGTTTGGAAGTTTCTTTTAAATTATCTTC 299
consensus_6188#1      -------ATCACTTAATGCGATTTAAT-GAACATTTCCTTGAGTTTTCGAATTTCAAATC 114
                             *     ***** ***    *  **  ***    *  * **  ** **    **

consensus_6188#0      CCTATAATGTTGACAAACG-ACAAGAACGGATTACTTTTAACAGAAGGCAATATGAAGGT 358
consensus_6188#1      TTTCTAAAACCAATAAACATGTGAAAAAAGGTTAAGTGCCATAGAGAGACTGGTACAA-- 172
                        * ***     * ****     * **  * ***  *   * ***  *     *  *   

consensus_6188#0      TATATAAAAGAATTCGTATTTGAGTCTTGTATGGCAGATGCTATGCCTGCTGATCATCCA 418
consensus_6188#1      -ATGTGAGTTAGTTTAAATGTCCATTACACATCAGAACAGCGA-----GATGAA-ATTCA 225
                       ** * *   * **   ** *   *     **   *   ** *     * ***  ** **

consensus_6188#0      TTAAATTTGGAACCAGATGGAAATTGGATCACGTTTTTTCGCGATAATGAAANTTTACTT 478
consensus_6188#1      TATAATAGAAAACAAGAT---AACTGAA----ATGACTTAGTAGTTATGAGGATG-ACTG 277
                      *  ***    *** ****   ** ** *     *   ** *   * ****   *  *** 

consensus_6188#0      CAAATTAATAAAGACTGTCAGAGACTATGTC 509
consensus_6188#1      AATACTGAGAA-------------------- 288
                       * * * * **