These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTATGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCTACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTCCTTTACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTATAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCAATAGTTCTGGTAGAGTTCAGGTCAGAA] [+] EMBL CD151657 [TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTATGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCTACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTCCTTTACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTATAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCAATAGTTCTGGTAGAGTTCAGGTCAGAA] [+] EMBL CD120252 [ CATAACTTGTGTCTAAGAACGAATTCTTTCCTTTCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCACTCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATCCTTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTCACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATAT ] consensusID : consensus_6192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [GAAGGATGCGGTTGGAGATATACCCTGTTACACGGGAAGCAGGAAGAACAGAGAGATAGCAATAGTGATGCTTACATTAATACTCAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCTTGTATGGATAAAAAATGGTGAGAAGATTATTCTGACTTGCGCCTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC] [+] EMBL CD097357 [GAAGGATGCGGTTGGAGATATACCCTGTTACACGGGAAGCAGGAAGAACAGAGAGATAGCAATAGTGATGCTTACATTAATACTCAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCTTGTATGGATAAAAAATGGTGAGAAGATTATTCTGACTTGCGCCTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC] consensusID : consensus_6192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [CTGAAGGCGAACCATATAGCAAGAAACTGTCGAGCACCAAGATCATGTGCCGTCAAAGGATGTGGTTGGAGACACCATACGTTGTTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGATAGTGATGCTTGCATTAATACTCATTTCTGTACGGAGGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCCTGTATGGATATNAAAATGGTG] [+] EMBL CD090851 [CTGAAGGCGAACCATATAGCAAGAAACTGTCGAGCACCAAGATCATGTGCCGTCAAAGGATGTGGTTGGAGACACCATACGTTGTTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGATAGTGATGCTTGCATTAATACTCATTTCTGTACGGAGGGAAGTGTTAAGCGTATGCAGAGACCAGTAGCATTTGCAGTAGTGCCTGTATGGATATNAAAATGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6192#1 ------------------------------------------------------------ consensus_6192#2 ------------------------------------------------------------ consensus_6192#0 TTAATGTAAACATCACTATTGCTATCTCTCTGTTTTTCCTGCTTCTCGTGTAATAGGGTA 60 consensus_6192#1 ------------------------------------------------------------ consensus_6192#2 ------------------------------------------------------------ consensus_6192#0 TGATGTCTCCAACCGCATCCTTCAACAACACATGACCTCGTCCATCGACAGTTTTTTGCT 120 consensus_6192#1 ------------------------------------------------------------ consensus_6192#2 ---------------------------------CTGAAGGCGAACCATATAGCAAGAAAC 27 consensus_6192#0 ACATGGTTAGCCTTCAGACAAACATTACATAACTTATGTCTAAGAACGAATTCTTTCCTT 180 consensus_6192#1 ---------------------------GAAG---GATGCGGTTGGAGATA---TACCCTG 27 consensus_6192#2 TGTCGAGCACCAAGATCATGTGCCGTCAAAG---GATGTGGTTGGAGACACCATACGTTG 84 consensus_6192#0 TCTCTAACATTCTTATCTTGAAACTTCTGACATTGATCTAAAGAATGATTACCTGAGCAC 240 * *** ** * consensus_6192#1 TTA-CACGGGAAGCAGGAAGAACAGAGAGATAGCAAT-AGTGATGCTTACAT-TAATACT 84 consensus_6192#2 TTNACATAGGAAGCAGGGAGAACAGAGAGATAGCGAT-AGTGATGCTTGCAT-TAATACT 142 consensus_6192#0 TCCAAACAGGATAAACTAAGTAAGGAGACATTGTCATCATTAGTACTCGCATATGATATC 300 * * *** * ** * **** ** * ** * * * ** *** * *** consensus_6192#1 CAGTTCTGTACGGAAGGAAGTGTTAAGCGTATGC----AGAGACCAGTAGC---ATTTGC 137 consensus_6192#2 CATTTCTGTACGGAGGGAAGTGTTAAGCGTATGC----AGAGACCAGTAGC---ATTTGC 195 consensus_6192#0 C-TTGCTGCATTGTAATCTGCACTAATTCTACCTTTTAAAACCCCAACATCCCTATTGTC 359 * * *** * * * *** ** * * *** * * *** * consensus_6192#1 AGTAGTGCTTGTATGGATA-AAAA--------ATGGTGAGAAGATTATTCTGACTTGCGC 188 consensus_6192#2 AGTAGTGCCTGTATGGATATNAAA--------ATGGTG---------------------- 225 consensus_6192#0 ACTATTACTACCGCGGTTGACGAGTAATCCATATCGAGTATTAGCCATATCGGCTTGTTC 419 * ** * * ** * * ** * * consensus_6192#1 CTTTCTAGATAGCGGGTCAGGGACGTCCCTCATTGTTGATGATCTGGCC----------- 237 consensus_6192#2 ------------------------------------------------------------ consensus_6192#0 CTTT--ACAAAGGCAGTAAGGTCGGCGAACAGAGGCTCACGACCTCCTCTGATAATCTTA 477 consensus_6192#1 ------------------------------------------------------------ consensus_6192#2 ------------------------------------------------------------ consensus_6192#0 TAAGCTGTCTTTAGCCACTTTTGTTGAACATGTGTCGGTAACTTCAGAACCATAGCTTCA 537 consensus_6192#1 --------------------------- consensus_6192#2 --------------------------- consensus_6192#0 ATAGTTCTGGTAGAGTTCAGGTCAGAA 564 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||