These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence [CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG-TCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCATCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCAGTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAGCGGTTCACAGGAAACGGAGTCT] [+] EMBL CD131754 [CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCTCCTCCTCCTCCTCCACCACCACCATAGTGTCCACGACCACTGGTACAATCCCGAGCAGTATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGACTCGATACGCCGCGATTACCTCCGCCTCCATCTCTATCACCATCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCAGTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAGCGGTTCACAGGAAACGGAGTCT] [+] EMBL CD146166 [ CTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTAGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG TCCGCCGCGATAACCTCCGCCTCCACCTCTACC ] [-] EMBL CD155517 [ TCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG TCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCAcc ] consensusID : consensus_6219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [TTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTCATAACCACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA] [-] EMBL CD148244 [TTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTCATAACCACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6219#0 CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGA 60 consensus_6219#1 ------------------------------------------TTGAAACAGCCGTCTCGA 18 ****************** consensus_6219#0 CGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCT 120 consensus_6219#1 CGACCATCGTTATTGTCACGATCTCT-----------------------CATAACCACCT 55 ************************** * * **** consensus_6219#0 CCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCA 180 consensus_6219#1 CCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCA 115 ************************************************************ consensus_6219#0 TAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGA 240 consensus_6219#1 TAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGA 175 ************************************************************ consensus_6219#0 TCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCA 300 consensus_6219#1 TCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA------ 229 ****************************************************** consensus_6219#0 TCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCA 360 consensus_6219#1 ------------------------------------------------------------ consensus_6219#0 GTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTAC 420 consensus_6219#1 ------------------------------------------------------------ consensus_6219#0 TGAGACCCAGCGGTTCACAGGAAACGGAGTCT 452 consensus_6219#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||