These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1036 fasta sequence [GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATCTCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCACAAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGAGAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACA] [+] EMBL CD129316 [GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATCTCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCACAAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGAGAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTAC ] [-] EMBL CD153966 [ tnTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTNTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACA] consensusID : consensus_6221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1002 fasta sequence [CTAAACATGAACCTGTTCATATAGAGAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACATGATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATGTTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGAGTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTGTATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGATGAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTAGTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAAGTGGGGTGAGGTGAT] [-] EMBL CD154267 [CTAAACATGAACCTGTTCATATAGAGAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACATGATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGA ] [+] EMBL CD147071 [ AGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATGTTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGAGTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTGTATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGATGAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTAGTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAAGTGGGGTGAGGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6221#0 GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCA 60 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 CATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAA 120 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 TAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGG 180 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 ACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTA 240 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 AGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATC 300 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 TCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCAC 360 consensus_6221#1 ------------------------------------------------------------ consensus_6221#0 AAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGA 420 consensus_6221#1 ----------------------------------CTAAACATGAACCTGTTCATAT-AGA 25 ********************** *** consensus_6221#0 GAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGT 480 consensus_6221#1 GAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGT 85 ********************* ********** ******************* *** *** consensus_6221#0 CAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTA 540 consensus_6221#1 CAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTA 145 ************************************* ********************** consensus_6221#0 ATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCAT 600 consensus_6221#1 ATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCAT 205 ************************************************************ consensus_6221#0 TTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCG 660 consensus_6221#1 TTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCG 265 ************************************************************ consensus_6221#0 TTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATA 720 consensus_6221#1 TTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATA 325 ******* **************** *********************************** consensus_6221#0 CCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAAC 780 consensus_6221#1 CCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAAC 385 ************************************************************ consensus_6221#0 AATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCA 840 consensus_6221#1 AATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCA 445 ************************************************************ consensus_6221#0 TTTATTTATCACCT-TCAAACAACAGCAATAAAT-------AAGTACTGTG--TGCAAAA 890 consensus_6221#1 TTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACAT 505 *********** ** * ** *** * * *** ** *** ** * consensus_6221#0 TATTTCACCATTTCTAA----TAATAATTG--TGACACTACCCAGTAACAAGGTGCATTA 944 consensus_6221#1 GATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTA 565 ** *** * * ** ** * * * * *********************** consensus_6221#0 GCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAA 1004 consensus_6221#1 GCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAA 625 ************************************************************ consensus_6221#0 CCGGTGGAAAGAGCTACACACACACACACACA---------------------------- 1036 consensus_6221#1 CCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATG 685 ******************************** consensus_6221#0 ------------------------------------------------------------ consensus_6221#1 TTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGA 745 consensus_6221#0 ------------------------------------------------------------ consensus_6221#1 GTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTG 805 consensus_6221#0 ------------------------------------------------------------ consensus_6221#1 TATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGAT 865 consensus_6221#0 ------------------------------------------------------------ consensus_6221#1 GAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTA 925 consensus_6221#0 ------------------------------------------------------------ consensus_6221#1 GTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGG 985 consensus_6221#0 ----------------- consensus_6221#1 AAGTGGGGTGAGGTGAT 1002 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||